Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr4P01990_001 | |
| GSMUA_Achr5P04550_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14700.1 | GSMUA_Achr10P... | AT5G48930.1 | 21798944 |
| AT5G14700.1 | GSMUA_Achr4P01990_001 | AT5G48930.1 | 21798944 |
| AT5G14700.1 | GSMUA_Achr5P04550_001 | AT5G48930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P07010_001 | Banana | cytosol | 49.11 | 40.15 |
| Os05t0578500-01 | Rice | cytosol | 45.24 | 40.11 |
| TraesCS1A01G417800.1 | Wheat | cytosol, peroxisome, plastid | 43.15 | 39.73 |
| TraesCS1B01G447900.1 | Wheat | cytosol, peroxisome, plastid | 43.75 | 39.3 |
| GSMUA_Achr5P09070_001 | Banana | cytosol, mitochondrion | 41.67 | 38.67 |
| GSMUA_Achr6P23260_001 | Banana | cytosol | 38.39 | 35.54 |
| TraesCS1D01G425400.2 | Wheat | cytosol | 42.56 | 35.31 |
| HORVU1Hr1G091350.2 | Barley | cytosol, plastid | 25.0 | 31.46 |
| KRG93276 | Soybean | cytosol | 31.85 | 29.56 |
| VIT_14s0066g01150.t01 | Wine grape | cytosol | 31.55 | 29.36 |
| AT5G14700.1 | Thale cress | cytosol | 29.76 | 27.17 |
| Bra008743.1-P | Field mustard | cytosol | 29.46 | 26.9 |
| KRH56594 | Soybean | cytosol | 21.43 | 26.87 |
| CDY09878 | Canola | cytosol | 29.17 | 26.63 |
| CDX69564 | Canola | cytosol | 29.17 | 26.63 |
| Bra023481.1-P | Field mustard | cytosol | 28.57 | 26.16 |
| CDX85588 | Canola | cytosol | 28.57 | 26.09 |
| CDX91029 | Canola | cytosol | 28.27 | 25.89 |
| GSMUA_Achr4P16990_001 | Banana | cytosol | 22.62 | 25.17 |
| GSMUA_Achr4P28860_001 | Banana | plastid | 22.02 | 24.58 |
| KRG93279 | Soybean | cytosol | 14.29 | 22.54 |
| GSMUA_Achr5P03490_001 | Banana | plastid | 20.83 | 22.51 |
| GSMUA_Achr3P03360_001 | Banana | cytosol | 21.13 | 21.52 |
| Solyc08g005120.2.1 | Tomato | plastid | 1.49 | 2.09 |
| PGSC0003DMT400045987 | Potato | cytosol | 2.98 | 1.9 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | InterPro:3Beta_OHSteriod_DH/Estase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003854 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0016616 | GO:GO:0055114 | EnsemblPlantsGene:GSMUA_Achr6G27330_001 | EnsemblPlants:GSMUA_Achr6P27330_001 | EnsemblPlants:GSMUA_Achr6T27330_001 | UniProt:M0TAM8 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF01073 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF567 | SUPFAM:SSF51735 | UniParc:UPI0002948904 |
| SEG:seg | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G27330_001]
Coordinates
chr6:-:27863365..27865780
Molecular Weight (calculated)
36767.7 Da
IEP (calculated)
9.336
GRAVY (calculated)
-0.441
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLRSTASL EAEIEEMRET LLRSGGSGRA DVLKAEPGGV RRRVVGDGGG GDARTVCVTG GISFIGFAVV NRLLDRGYTV RLALQSQEDL DKLRETEMFG
101: EMGRDGVWAV MADVMNLESL RQAFDGCAGV FHTSSVVDPG GLSGYTKHMA DKEVRAAELV VEACVRTQSV RRCVFTSSLL ACVWRENTCT RSSRRATSVD
201: ENCWSDQSVC RDRKAMVTHL SVRSMVGTGQ DDGRESGMAG GTRKGLETGD CLPGPCHRTW FPPSQLYQFH CLPQRSSAAV HGGVARHHRR GEGRRGSRSS
301: LRGNGQHCLW SVHLLRSHHS KRARSDRIRA AAWPPR
101: EMGRDGVWAV MADVMNLESL RQAFDGCAGV FHTSSVVDPG GLSGYTKHMA DKEVRAAELV VEACVRTQSV RRCVFTSSLL ACVWRENTCT RSSRRATSVD
201: ENCWSDQSVC RDRKAMVTHL SVRSMVGTGQ DDGRESGMAG GTRKGLETGD CLPGPCHRTW FPPSQLYQFH CLPQRSSAAV HGGVARHHRR GEGRRGSRSS
301: LRGNGQHCLW SVHLLRSHHS KRARSDRIRA AAWPPR
001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGKLKTN LIMNMNPKLR NRPRIMFIVI
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGKLKTN LIMNMNPKLR NRPRIMFIVI
Arabidopsis Description
Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.