Factsheet for GSMUA_Achr6P23260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P01990_001
GSMUA_Achr5P04550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	GSMUA_Achr10P...	AT5G48930.1	21798944
AT5G14700.1	GSMUA_Achr4P01990_001	AT5G48930.1	21798944
AT5G14700.1	GSMUA_Achr5P04550_001	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P09070_001	Banana	cytosol, mitochondrion	61.98	62.15
KRG93279	Soybean	cytosol	29.48	50.23
KRH56594	Soybean	cytosol	36.09	48.88
KRG93276	Soybean	cytosol	45.45	45.58
AT5G14700.1	Thale cress	cytosol	44.9	44.29
VIT_14s0066g01150.t01	Wine grape	cytosol	43.53	43.77
Bra023481.1-P	Field mustard	cytosol	42.98	42.51
Bra008743.1-P	Field mustard	cytosol	42.98	42.39
CDY09878	Canola	cytosol	42.98	42.39
CDX85588	Canola	cytosol	42.98	42.39
CDX69564	Canola	cytosol	42.7	42.12
GSMUA_Achr9P07010_001	Banana	cytosol	47.38	41.85
CDX91029	Canola	cytosol	42.15	41.69
GSMUA_Achr6P27330_001	Banana	cytosol	35.54	38.39
GSMUA_Achr5P03490_001	Banana	plastid	30.3	35.37
GSMUA_Achr4P16990_001	Banana	cytosol	27.82	33.44
GSMUA_Achr4P28860_001	Banana	plastid	27.0	32.56
GSMUA_Achr3P03360_001	Banana	cytosol	26.45	29.09

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491
GO:GO:0016616	GO:GO:0055114	EnsemblPlantsGene:GSMUA_Achr6G23260_001	EnsemblPlants:GSMUA_Achr6P23260_001	EnsemblPlants:GSMUA_Achr6T23260_001	UniProt:M0T9H4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF483	SUPFAM:SSF51735	UniParc:UPI000294B1DB
SEG:seg	:	:	:	:	:

Description

cinnamoyl-CoA reductase-related, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G23260_001]

Coordinates

chr6:-:23337630..23339517

Molecular Weight (calculated)

39661.4 Da

IEP (calculated)

8.072

GRAVY (calculated)

-0.227

Length

363 amino acids

Sequence
(BLAST)

001: MGAMGRSEGA VAEAEALRKA ILSGCRGRSA RKTGPVGVRR SREGDGGGRI EGRAVCVTGG VSFVGSALVD RLLDRGYAVR LLVETQEDWD KLRETETLWG
101: GVSAVMADMT DMDSLCRAFD GCTGVFHTSS SLDPGGISGY SKHMAEIEVR AAERVIEACV RTESVRKCVF TSSLLACTWR QSDPRSRRVV DESCWSDEQL
201: CRDKKLWYAL GKTMAEKAAW EAAARGRRDL KLATVCPALV TGSGFHRRNI AASIAYLKGA REMFAEGLLV TVDVEKLAGA HVSIYEAMSS HACGRYICYD
301: RVIERGEAEE LERRLGIPSR ILLSGETAAP CSPSSELSNQ KLFRLMNSGR KCTFDVYSDL TWN

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.