Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14700.1 | CDY05770 | AT5G48930.1 | 21798944 |
| AT5G14700.1 | CDY22880 | AT5G48930.1 | 21798944 |
| AT5G14700.1 | CDY31956 | AT5G48930.1 | 21798944 |
| AT5G14700.1 | CDY44162 | AT5G48930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69564 | Canola | cytosol | 98.91 | 98.91 |
| AT5G14700.1 | Thale cress | cytosol | 88.86 | 88.86 |
| CDX85588 | Canola | cytosol | 85.87 | 85.87 |
| CDX91029 | Canola | cytosol | 83.97 | 84.2 |
| KRG93279 | Soybean | cytosol | 32.07 | 55.4 |
| KRH56594 | Soybean | cytosol | 39.13 | 53.73 |
| VIT_14s0066g01150.t01 | Wine grape | cytosol | 48.91 | 49.86 |
| KRG93276 | Soybean | cytosol | 48.91 | 49.72 |
| PGSC0003DMT400001401 | Potato | cytosol | 46.2 | 47.22 |
| OQU87211 | Sorghum | cytosol | 35.6 | 46.45 |
| Solyc02g086770.2.1 | Tomato | cytosol | 44.84 | 45.83 |
| Zm00001d044104_P001 | Maize | cytosol | 44.57 | 44.09 |
| HORVU3Hr1G057200.1 | Barley | cytosol | 44.29 | 43.58 |
| TraesCS3B01G259000.1 | Wheat | cytosol, peroxisome, plastid | 44.02 | 43.55 |
| TraesCS3A01G229700.1 | Wheat | cytosol | 43.21 | 43.09 |
| TraesCS1A01G417800.1 | Wheat | cytosol, peroxisome, plastid | 42.66 | 43.01 |
| GSMUA_Achr6P23260_001 | Banana | cytosol | 42.39 | 42.98 |
| TraesCS3D01G223500.1 | Wheat | cytosol | 43.21 | 42.63 |
| Zm00001d009666_P001 | Maize | cytosol | 43.21 | 42.63 |
| EES18736 | Sorghum | cytosol | 42.39 | 42.51 |
| Os01t0639200-01 | Rice | cytosol | 43.75 | 42.48 |
| Zm00001d011446_P001 | Maize | cytosol | 43.48 | 41.99 |
| TraesCS1B01G447900.1 | Wheat | cytosol, peroxisome, plastid | 42.66 | 41.98 |
| Os05t0578500-01 | Rice | cytosol | 42.12 | 40.9 |
| HORVU1Hr1G091400.1 | Barley | cytosol | 27.99 | 40.71 |
| GSMUA_Achr5P09070_001 | Banana | cytosol, mitochondrion | 39.4 | 40.06 |
| CDX72244 | Canola | cytosol | 27.72 | 33.66 |
| CDY39681 | Canola | cytosol | 26.36 | 32.01 |
| CDY65186 | Canola | cytosol | 26.09 | 31.68 |
| TraesCS1D01G425400.2 | Wheat | cytosol | 34.78 | 31.6 |
| CDY39207 | Canola | cytosol, extracellular, nucleus | 10.87 | 31.01 |
| GSMUA_Achr9P07010_001 | Banana | cytosol | 34.51 | 30.9 |
| KXG22093 | Sorghum | cytosol | 8.42 | 30.1 |
| GSMUA_Achr6P27330_001 | Banana | cytosol | 26.63 | 29.17 |
| HORVU1Hr1G091350.2 | Barley | cytosol, plastid | 18.21 | 25.09 |
Protein Annotations
| EnsemblPlants:CDY09878 | EnsemblPlantsGene:GSBRNA2T00031632001 | Gene3D:3.40.50.720 | GO:A0A078FCU6 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0050662 | InterPro:Epimerase_deHydtase | InterPro:NAD(P)-bd_dom_sf | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF483 |
| PFAM:PF01370 | ProteinID:CDY09878 | ProteinID:CDY09878.1 | SEG:seg | SUPFAM:SSF51735 | UniParc:UPI0004EDDF07 |
| UniProt:A0A078FCU6 | MapMan:35.1 | : | : | : | : |
Description
BnaC09g42830DBnaC09g42830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCU6]
Coordinates
chrLK031999:-:772619..775265
Molecular Weight (calculated)
40380.9 Da
IEP (calculated)
7.026
GRAVY (calculated)
-0.240
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MRIVRASENF SAELKEFLCA AVQRRRDDDG FRGSGGGKSR NAMDLDPDGG NRLVCVTGGV SYLGRAIVKR LLVHGYTVRI VIDCEEDKEK VSEMEADAET
101: ASFSNRITSV VSRLTEIESL VKAFDGCAGV FHTAAFVDPA GIAGYSKSMA ELEAKVSENV TEACTRTGSV RKCVFTSSLL ACALQENFYN DLDHSVINEE
201: SWSDEQFCIN NKLWYALGKL KAEKAAWRIA DSKGLKLATI CPALITGPDF FHRNSTSTLA YLKGAKEMYS NGLLATMDVN RLAKAHVRLW EGLGDKTAFG
301: RYICFDTILS KDGAEKLAKD IGVQVEKICG SSSDSNANAE TSTRNLKISD KKLFDLMSRT LRSCYHES
101: ASFSNRITSV VSRLTEIESL VKAFDGCAGV FHTAAFVDPA GIAGYSKSMA ELEAKVSENV TEACTRTGSV RKCVFTSSLL ACALQENFYN DLDHSVINEE
201: SWSDEQFCIN NKLWYALGKL KAEKAAWRIA DSKGLKLATI CPALITGPDF FHRNSTSTLA YLKGAKEMYS NGLLATMDVN RLAKAHVRLW EGLGDKTAFG
301: RYICFDTILS KDGAEKLAKD IGVQVEKICG SSSDSNANAE TSTRNLKISD KKLFDLMSRT LRSCYHES
001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
Arabidopsis Description
Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.