Factsheet for Solyc02g086770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g117600.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	Solyc03g117600.2.1	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001401	Potato	cytosol	91.67	91.67
VIT_14s0066g01150.t01	Wine grape	cytosol	52.5	52.35
KRH56594	Soybean	cytosol	38.61	51.87
KRG93279	Soybean	cytosol	30.56	51.64
KRG93276	Soybean	cytosol	51.11	50.83
CDX91029	Canola	cytosol	47.22	46.32
AT5G14700.1	Thale cress	cytosol	46.94	45.92
Bra023481.1-P	Field mustard	cytosol	46.67	45.78
CDX85588	Canola	cytosol	46.67	45.65
Bra008743.1-P	Field mustard	cytosol	46.11	45.11
CDY09878	Canola	cytosol	45.83	44.84
CDX69564	Canola	cytosol	45.83	44.84
Solyc02g089770.2.1	Tomato	cytosol	34.17	35.86
Solyc08g076790.2.1	Tomato	cytosol	26.94	30.79
Solyc06g061280.2.1	Tomato	cytosol, plastid	25.83	29.9
Solyc03g097170.2.1	Tomato	cytosol	26.67	29.27
Solyc08g005120.2.1	Tomato	plastid	1.94	2.93

Protein Annotations

EnsemblPlants:Solyc02g086770.2.1	EnsemblPlantsGene:Solyc02g086770.2	Gene3D:3.40.50.720	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854
GO:GO:0006629	GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491
GO:GO:0016616	GO:GO:0055114	InterPro:3Beta_OHSteriod_DH/Estase	InterPro:NAD(P)-bd_dom_sf	PANTHER:PTHR10366	PANTHER:PTHR10366:SF483
PFAM:PF01073	SUPFAM:SSF51735	UniParc:UPI0002767B55	UniProt:K4BBI4	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:49383130..49386522

Molecular Weight (calculated)

40215.4 Da

IEP (calculated)

6.612

GRAVY (calculated)

-0.150

Length

360 amino acids

Sequence
(BLAST)

001: MGIVCPDESK RIEIEEFRRM LLSNAAVHRT KAGDEIQNPG QLPATNRHNR ELEEKKVCVT SGVSFLGIAI VNQLLLRGYS VRVIVEKQED LEKLREMEIS
101: GEMRQSMNTV EAVMARLNDI ESLSQAFSGC RGVFHTAAFV DPAGLSGYSK SMVEVEVLVT KNVSQACAIT PSVRNCVLTS SLVACVWQDI NSSTIIDHDC
201: WSDESLCIDK KLWYALGKLK AERVACNIAR ESGFKLATIC PGLVTGPEFI SRNPTPTIAY LKGAEEMFRN GALATVDVNR LAVEHVLVFE DMKNTSYNRY
301: ISFDQVVRSE EELEKLARET GIDIRSMRSN WRTNSSNIVK LSNAKLCCLM STIHRCHNEI

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.