Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0018g01190.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14700.1 | VIT_09s0018g01190.t01 | AT5G48930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG93279 | Soybean | cytosol | 35.18 | 59.62 |
| KRH56594 | Soybean | cytosol | 42.94 | 57.84 |
| KRG93276 | Soybean | cytosol | 55.96 | 55.8 |
| PGSC0003DMT400001401 | Potato | cytosol | 52.35 | 52.5 |
| Solyc02g086770.2.1 | Tomato | cytosol | 52.35 | 52.5 |
| Bra008743.1-P | Field mustard | cytosol | 49.86 | 48.91 |
| CDX69564 | Canola | cytosol | 49.86 | 48.91 |
| CDY09878 | Canola | cytosol | 49.86 | 48.91 |
| AT5G14700.1 | Thale cress | cytosol | 49.31 | 48.37 |
| CDX91029 | Canola | cytosol | 49.03 | 48.23 |
| Bra023481.1-P | Field mustard | cytosol | 48.75 | 47.96 |
| CDX85588 | Canola | cytosol | 48.75 | 47.83 |
| OQU87211 | Sorghum | cytosol | 36.84 | 47.16 |
| TraesCS1A01G417800.1 | Wheat | cytosol, peroxisome, plastid | 45.15 | 44.66 |
| EES18736 | Sorghum | cytosol | 44.6 | 43.87 |
| TraesCS1B01G447900.1 | Wheat | cytosol, peroxisome, plastid | 45.15 | 43.58 |
| GSMUA_Achr6P23260_001 | Banana | cytosol | 43.77 | 43.53 |
| Zm00001d009666_P001 | Maize | cytosol | 44.88 | 43.43 |
| Zm00001d044104_P001 | Maize | cytosol | 44.32 | 43.01 |
| GSMUA_Achr5P09070_001 | Banana | cytosol, mitochondrion | 42.94 | 42.82 |
| Os05t0578500-01 | Rice | cytosol | 44.88 | 42.74 |
| Os01t0639200-01 | Rice | cytosol | 44.04 | 41.95 |
| HORVU1Hr1G091400.1 | Barley | cytosol | 29.09 | 41.5 |
| TraesCS3A01G229700.1 | Wheat | cytosol | 42.38 | 41.46 |
| HORVU3Hr1G057200.1 | Barley | cytosol | 42.94 | 41.44 |
| TraesCS3B01G259000.1 | Wheat | cytosol, peroxisome, plastid | 42.38 | 41.13 |
| TraesCS3D01G223500.1 | Wheat | cytosol | 42.38 | 41.02 |
| Zm00001d011446_P001 | Maize | cytosol | 42.94 | 40.68 |
| VIT_14s0083g00320.t01 | Wine grape | cytosol | 36.01 | 36.41 |
| KXG22093 | Sorghum | cytosol | 9.7 | 33.98 |
| VIT_11s0037g01030.t01 | Wine grape | cytosol | 26.59 | 33.33 |
| TraesCS1D01G425400.2 | Wheat | cytosol | 36.29 | 32.35 |
| VIT_02s0012g01570.t01 | Wine grape | extracellular | 26.04 | 32.3 |
| VIT_16s0039g01670.t01 | Wine grape | cytosol | 27.7 | 32.05 |
| GSMUA_Achr9P07010_001 | Banana | cytosol | 36.29 | 31.87 |
| GSMUA_Achr6P27330_001 | Banana | cytosol | 29.36 | 31.55 |
| HORVU1Hr1G091350.2 | Barley | cytosol, plastid | 18.01 | 24.34 |
Protein Annotations
| EntrezGene:100262839 | wikigene:100262839 | Gene3D:3.40.50.720 | MapMan:35.1 | InterPro:3Beta_OHSteriod_DH/Estase | ProteinID:CBI34910 |
| ProteinID:CBI34910.3 | UniProt:D7TWN5 | EMBL:FN596252 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003854 |
| GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016491 |
| GO:GO:0016616 | GO:GO:0055114 | EntrezGene:LOC100262839 | wikigene:LOC100262839 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF01073 |
| PANTHER:PTHR10366 | PANTHER:PTHR10366:SF483 | SUPFAM:SSF51735 | TIGR:TC57545 | TIGR:TC65935 | UniParc:UPI00015CA1A9 |
| ArrayExpress:VIT_14s0066g01150 | EnsemblPlantsGene:VIT_14s0066g01150 | EnsemblPlants:VIT_14s0066g01150.t01 | RefSeq:XP_002274230 | RefSeq:XP_002274230.1 | SEG:seg |
Description
No Description!
Coordinates
chr14:-:27631422..27634347
Molecular Weight (calculated)
39296.5 Da
IEP (calculated)
4.995
GRAVY (calculated)
-0.204
Length
361 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVRNDEIH RQELEDFRRM LLASAGAYKV NAHEHRGEEG TRAGKAKIGT AQDDEEEKLV CVTSGVSFLG LALVNKLLSR GYSVRVIVDS EGDVEKVEEM
101: RRNNSNIWPV TAKLSEVESL EAAMEGCRGV FHTSGFVDPA GLTGYSKAMA GIEVKASENV MEACARTPSV KGCVLTSSLL ACVWQGGFNA DPSPIVDHDS
201: WSDEAFCLDR KLWYAWGKLK AEKAAWRVAE EKGLRLSTIC PALVTGPEFY RRNPTATIAY LKGAYEMYGS GLLATVDVTR LAEAHVVVFE AMSKASFGRY
301: ICFDSVVGGE AEAENLAAET GMPLNRITGD GSSSFSTRFE LSDGRLSGLM SRTSCYSESQ E
101: RRNNSNIWPV TAKLSEVESL EAAMEGCRGV FHTSGFVDPA GLTGYSKAMA GIEVKASENV MEACARTPSV KGCVLTSSLL ACVWQGGFNA DPSPIVDHDS
201: WSDEAFCLDR KLWYAWGKLK AEKAAWRVAE EKGLRLSTIC PALVTGPEFY RRNPTATIAY LKGAYEMYGS GLLATVDVTR LAEAHVVVFE AMSKASFGRY
301: ICFDSVVGGE AEAENLAAET GMPLNRITGD GSSSFSTRFE LSDGRLSGLM SRTSCYSESQ E
001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
Arabidopsis Description
Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.