Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_02s0012g01570.t01 | Wine grape | extracellular | 61.86 | 66.32 |
Solyc03g097170.2.1 | Tomato | cytosol | 62.5 | 59.45 |
PGSC0003DMT400008172 | Potato | cytosol | 62.82 | 57.14 |
GSMUA_Achr4P28860_001 | Banana | plastid | 54.17 | 56.15 |
GSMUA_Achr5P03490_001 | Banana | plastid | 54.17 | 54.34 |
GSMUA_Achr4P16990_001 | Banana | cytosol | 50.64 | 52.32 |
TraesCS1B01G209700.1 | Wheat | cytosol | 50.32 | 51.14 |
TraesCS1A01G194900.1 | Wheat | cytosol | 50.32 | 50.81 |
TraesCS1D01G198500.1 | Wheat | cytosol | 50.0 | 50.65 |
Os10t0576900-01 | Rice | cytosol | 51.28 | 50.16 |
GSMUA_Achr3P03360_001 | Banana | cytosol | 50.64 | 47.88 |
Zm00001d030090_P001 | Maize | cytosol, plastid | 49.04 | 46.79 |
Zm00001d051557_P001 | Maize | plastid | 30.13 | 46.31 |
EER94430 | Sorghum | cytosol | 49.04 | 46.22 |
Zm00001d034716_P001 | Maize | cytosol, nucleus, peroxisome | 31.73 | 45.21 |
VIT_11s0037g01030.t01 | Wine grape | cytosol | 40.06 | 43.4 |
VIT_14s0083g00320.t01 | Wine grape | cytosol | 33.33 | 29.13 |
VIT_14s0066g01150.t01 | Wine grape | cytosol | 32.05 | 27.7 |
Protein Annotations
EntrezGene:100257919 | wikigene:100257919 | Gene3D:3.40.50.720 | MapMan:35.1 | ProteinID:CCB50587 | ProteinID:CCB50587.1 |
UniProt:F6HEE1 | EMBL:FN595750 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004611 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006094 | GO:GO:0006139 | GO:GO:0006364 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0017076 | GO:GO:0032040 |
EntrezGene:LOC100257919 | wikigene:LOC100257919 | InterPro:NAD(P)-bd_dom | InterPro:NAD(P)-bd_dom_sf | PFAM:PF13460 | PANTHER:PTHR10366 |
PANTHER:PTHR10366:SF428 | SUPFAM:SSF51735 | TIGR:TC63412 | UniParc:UPI0002108D80 | ArrayExpress:VIT_16s0039g01670 | EnsemblPlantsGene:VIT_16s0039g01670 |
EnsemblPlants:VIT_16s0039g01670.t01 | unigene:Vvi.3082 | RefSeq:XP_002272449 | RefSeq:XP_002272449.1 | RefSeq:XP_002272488 | RefSeq:XP_002272488.1 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:-:1288449..1293824
Molecular Weight (calculated)
35003.5 Da
IEP (calculated)
5.213
GRAVY (calculated)
-0.240
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSLPDEV ISEKTVCVMD ASGRVGSALV RRLLRRGYTV HAALHGEYEI VEGVCCNKKK LRVFPADPLD YHSIMDALKG CSALFYSFEP PSDHPNYDEY
101: MADVEVRAAH NVLEACAQTD TIEKVVFTSS ITAVIWRDDR NSTPSDLDER NWSDVNFCRK FKLWHGVSKT LAERTAWALA MDRGVNMVSI NGGLLMADHL
201: TISNPYLKGA AEMFEDGVFV TVDLNFLVDA HISVFEDSSS YGRYLCFNHV INSNQDAIHL ANMLLPPSQS TPPPQSLSTK DNLEDTRVYQ QRISNKKLNK
301: LMVDFRSEVE VE
101: MADVEVRAAH NVLEACAQTD TIEKVVFTSS ITAVIWRDDR NSTPSDLDER NWSDVNFCRK FKLWHGVSKT LAERTAWALA MDRGVNMVSI NGGLLMADHL
201: TISNPYLKGA AEMFEDGVFV TVDLNFLVDA HISVFEDSSS YGRYLCFNHV INSNQDAIHL ANMLLPPSQS TPPPQSLSTK DNLEDTRVYQ QRISNKKLNK
301: LMVDFRSEVE VE
001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC
Arabidopsis Description
At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.