Factsheet for VIT_11s0037g01030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G23910.1	Thale cress	cytosol	67.36	63.82
Bra024073.1-P	Field mustard	cytosol	66.32	63.04
CDX72244	Canola	cytosol	66.32	63.04
AT4G30470.1	Thale cress	cytosol	65.62	62.38
Bra032137.1-P	Field mustard	cytosol	64.58	61.39
CDY39681	Canola	cytosol	64.58	61.39
CDY65186	Canola	cytosol	64.24	61.06
CDY39207	Canola	cytosol, extracellular, nucleus	25.0	55.81
VIT_02s0012g01570.t01	Wine grape	extracellular	41.67	41.24
VIT_16s0039g01670.t01	Wine grape	cytosol	43.4	40.06
VIT_14s0066g01150.t01	Wine grape	cytosol	33.33	26.59
VIT_14s0083g00320.t01	Wine grape	cytosol	30.56	24.65

Protein Annotations

EntrezGene:100251994	wikigene:100251994	Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	EMBL:AM431380
ProteinID:CAN73634	ProteinID:CAN73634.1	ProteinID:CCB59798	ProteinID:CCB59798.1	UniProt:F6HYN4	EMBL:FN596499
GO:GO:0003674	GO:GO:0003824	GO:GO:0003854	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016616	GO:GO:0055114	EntrezGene:LOC100251994	wikigene:LOC100251994
InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF390	SUPFAM:SSF51735	UniParc:UPI000210831A
ArrayExpress:VIT_11s0037g01030	EnsemblPlantsGene:VIT_11s0037g01030	EnsemblPlants:VIT_11s0037g01030.t01	RefSeq:XP_002271549	RefSeq:XP_002271549.1	SEG:seg

Description

No Description!

Coordinates

chr11:-:9952624..9955047

Molecular Weight (calculated)

32553.2 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.044

Length

288 amino acids

Sequence
(BLAST)

001: MDNQKPSVCV LDASTYVGFW ILKGLLSREI VKKIREMKKV EERLLVFTVD VLDYHSIIVA LKGCCALFCC LDDSDGYGYD DDTTVDLEVR GAINVVEACA
101: QTHGMQKIVF NSSLTAAVWR ENICSEEEVD ERSWSDQAYC RKLKLWYALA KTLTEQAAWA LAMDRMLNMV SINAGIVVGP SVAQHNPCST MSYLKEAAQM
201: YENGVLAFVD VSFLAEVHIR AFENQSTCGR YFCFNKIVNT EEEAVKLVRS LSPLIFLPPK YECQGNEVQS ERLRNKKLNK LVEGFAYE

Best Arabidopsis Sequence Match ( AT2G23910.1 )
(BLAST)

001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC

Arabidopsis Description

At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.