CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39681	Canola	cytosol	99.34	99.34
Bra032137.1-P	Field mustard	cytosol	97.36	97.36
AT2G23910.1	Thale cress	cytosol	87.13	86.84
CDX72244	Canola	cytosol	85.15	85.15
CDY39207	Canola	cytosol, extracellular, nucleus	29.04	68.22
VIT_11s0037g01030.t01	Wine grape	cytosol	61.06	64.24
KRH39555	Soybean	cytosol	42.9	43.48
KRH74401	Soybean	cytosol	42.24	42.81
Zm00001d034716_P001	Maize	cytosol, nucleus, peroxisome	30.69	42.47
Zm00001d051557_P001	Maize	plastid	28.05	41.87
Solyc08g076790.2.1	Tomato	cytosol	43.23	41.59
GSMUA_Achr4P28860_001	Banana	plastid	40.92	41.2
KRH45421	Soybean	cytosol	40.26	41.08
PGSC0003DMT400019823	Potato	cytosol, plastid	42.24	40.76
GSMUA_Achr4P16990_001	Banana	cytosol	40.26	40.4
Solyc06g061280.2.1	Tomato	cytosol, plastid	40.92	39.87
GSMUA_Achr5P03490_001	Banana	plastid	40.26	39.23
TraesCS1B01G209700.1	Wheat	cytosol	39.6	39.09
TraesCS1D01G198500.1	Wheat	cytosol	39.27	38.64
TraesCS1A01G194900.1	Wheat	cytosol	39.27	38.51
Zm00001d030090_P001	Maize	cytosol, plastid	41.25	38.23
EER94430	Sorghum	cytosol	41.58	38.07
Solyc03g097170.2.1	Tomato	cytosol	40.92	37.8
PGSC0003DMT400008172	Potato	cytosol	41.91	37.03
GSMUA_Achr3P03360_001	Banana	cytosol	40.26	36.97
Os10t0576900-01	Rice	cytosol	38.28	36.36
CDX69564	Canola	cytosol	32.01	26.36
CDX85588	Canola	cytosol	31.68	26.09
CDY09878	Canola	cytosol	31.68	26.09
CDX91029	Canola	cytosol	31.02	25.61
PGSC0003DMT400045216	Potato	plastid	40.92	22.1

Protein Annotations

EnsemblPlants:CDY65186	EnsemblPlantsGene:GSBRNA2T00045344001	Gene3D:3.40.50.720	GO:A0A078JHM5	InterPro:NAD(P)-bd_dom	InterPro:NAD(P)-bd_dom_sf
PANTHER:PTHR10366	PANTHER:PTHR10366:SF390	PFAM:PF13460	ProteinID:CDY65186	ProteinID:CDY65186.1	SEG:seg
SUPFAM:SSF51735	UniParc:UPI0004EBA86D	UniProt:A0A078JHM5	MapMan:35.1	:	:

Description

BnaC04g56240DBnaC04g56240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHM5]

Coordinates

chrLK034682:-:23107..25336

Molecular Weight (calculated)

34083.8 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.163

Length

303 amino acids

Sequence
(BLAST)

001: MNQEKPTSCC CVLDASTYVG FWILKKLLTR GYSVRAAIRK NGESILEEKI RNMQATEERL VVYDVDVLDY QSILVSLNNC NAVFCCLDNP EGYDEMEVDL
101: EVRGAINVVE ACARTESIDK IVFSSSLTAA IWTDNIGTQK DVDEKSWSDL DFCLKKKLWH ALAKTQSEKA AWALAMDRMV NMVSVNPGLT VGPSVTQHNP
201: RPTMSFLKGA AQMYENGVLA YVDVEFVADV HIRVFEDTSA CGRYFCFNQI VNTEEEALKL VEILSPLIPM PPRYEKDMQG SEVYEERLRN NKLNKLVEAG
301: SAC

Best Arabidopsis Sequence Match ( AT2G23910.1 )
(BLAST)

001: MNQEKTISCC CVLDASTYVG FWILKRLLTR GYSVHAAIRK NGESVLEEKI RDMEANEERL EVYDVDVLDY QSILISLNNC NAVFCCLDNP EGYDEEKEVD
101: LEVRGAINVV EACARTESIE KIVFSSSLTA AIWRDNIGTQ KDVDEKCWSD LDFCLKKKLW HALAKTQSEK AAWALAMDRM VNMVSVNPGL IVGPSVAQHN
201: PRPTMSYLKG AAQMYENGVL AYVDVEFVAD VHIRAFEDTS ACGRYFCFNQ IVNTEEEALK LVQTLSPLIP MPPRHEKEMQ GSEVYEERLR NKKLNKLVEA
301: GFAC

Arabidopsis Description

At2g23910 [Source:UniProtKB/TrEMBL;Acc:O82219]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.