Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003129_P001 | |
| Zm00001d017186_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G14700.1 | Zm00001d003129_P001 | AT5G48930.1 | 21798944 |
| AT5G14700.1 | Zm00001d017186_P001 | AT5G48930.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87211 | Sorghum | cytosol | 69.82 | 94.33 |
| Zm00001d044104_P001 | Maize | cytosol | 90.55 | 92.74 |
| KXG22093 | Sorghum | cytosol | 23.36 | 86.41 |
| TraesCS3A01G229700.1 | Wheat | cytosol | 79.0 | 81.57 |
| HORVU3Hr1G057200.1 | Barley | cytosol | 79.27 | 80.75 |
| Os01t0639200-01 | Rice | cytosol | 80.05 | 80.47 |
| TraesCS3B01G259000.1 | Wheat | cytosol, peroxisome, plastid | 78.48 | 80.38 |
| TraesCS3D01G223500.1 | Wheat | cytosol | 77.95 | 79.62 |
| Zm00001d009666_P001 | Maize | cytosol | 71.65 | 73.19 |
| KRH56594 | Soybean | cytosol | 35.17 | 50.0 |
| KRG93279 | Soybean | cytosol | 26.77 | 47.89 |
| AT5G14700.1 | Thale cress | cytosol | 42.78 | 44.29 |
| KRG93276 | Soybean | cytosol | 41.99 | 44.2 |
| Bra008743.1-P | Field mustard | cytosol | 42.26 | 43.75 |
| CDY09878 | Canola | cytosol | 41.99 | 43.48 |
| CDX69564 | Canola | cytosol | 41.99 | 43.48 |
| VIT_14s0066g01150.t01 | Wine grape | cytosol | 40.68 | 42.94 |
| CDX91029 | Canola | cytosol | 40.16 | 41.69 |
| Bra023481.1-P | Field mustard | cytosol | 40.16 | 41.69 |
| CDX85588 | Canola | cytosol | 40.16 | 41.58 |
| Zm00001d034716_P001 | Maize | cytosol, nucleus, peroxisome | 21.52 | 37.44 |
| Zm00001d030090_P001 | Maize | cytosol, plastid | 28.08 | 32.72 |
| Zm00001d051557_P001 | Maize | plastid | 17.32 | 32.51 |
Protein Annotations
| Gene3D:3.40.50.720 | MapMan:35.1 | UniProt:A0A1D6G0C0 | ProteinID:AQK96931.1 | InterPro:Epimerase_deHydtase | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003854 | GO:GO:0005488 | GO:GO:0006629 | GO:GO:0006694 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0016491 | GO:GO:0016616 | GO:GO:0050662 | GO:GO:0055114 |
| InterPro:NAD(P)-bd_dom_sf | PFAM:PF01370 | PANTHER:PTHR10366 | PANTHER:PTHR10366:SF567 | SUPFAM:SSF51735 | UniParc:UPI0008441938 |
| EnsemblPlantsGene:Zm00001d011446 | EnsemblPlants:Zm00001d011446_P001 | EnsemblPlants:Zm00001d011446_T001 | SEG:seg | : | : |
Description
NAD(P)-binding Rossmann-fold superfamily protein
Coordinates
chr8:-:150561818..150568628
Molecular Weight (calculated)
41592.3 Da
IEP (calculated)
7.167
GRAVY (calculated)
-0.260
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVLRSTQSL EAEVDELRAA LLAGGWRRSA GHADAKRAPR GDAGGAAARA VCVTGGISFV GFAVVDRLLR HGYTVRLALE TQEDMDKLRE MEMFGEDGRD
101: GGVSTVMANV MDPDGLRRAF DGCAGVFHTS AFVDPGGMSG YTKHMAALEA QAAERVIEAC VRTESVRKCV FTSSLLACVW RQDYPHDRRC PTTIDESCWS
201: DESFCRDNKE EATYCDASFF QLWFALGKTA AEKAAWRAAR GRDLKLVTIC PALVTGPGFR RRNSTASIAY LKGARAMLAD GLLATANVET VAEAHVHAYE
301: AMGDNTAGGR YICYDHVVKR PEEFAELERQ LGLPGGAAPA PAHGSDDRPA RFELCKRKLS RLMSSRRRCA YDTYYSVAFE V
101: GGVSTVMANV MDPDGLRRAF DGCAGVFHTS AFVDPGGMSG YTKHMAALEA QAAERVIEAC VRTESVRKCV FTSSLLACVW RQDYPHDRRC PTTIDESCWS
201: DESFCRDNKE EATYCDASFF QLWFALGKTA AEKAAWRAAR GRDLKLVTIC PALVTGPGFR RRNSTASIAY LKGARAMLAD GLLATANVET VAEAHVHAYE
301: AMGDNTAGGR YICYDHVVKR PEEFAELERQ LGLPGGAAPA PAHGSDDRPA RFELCKRKLS RLMSSRRRCA YDTYYSVAFE V
001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES
Arabidopsis Description
Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.