Factsheet for TraesCS3D01G223500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G005300.1
TraesCS1D01G021600.1
TraesCS2A01G354500.1
TraesCS2B01G374600.1
TraesCS2D01G354300.1
TraesCS3A01G517500.1
TraesCS3B01G002000.1
TraesCS3D01G525000.1
TraesCS6A01G232200.1
TraesCS6B01G249400.1
TraesCS6D01G203000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	TraesCS1B01G005300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS1D01G021600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2A01G354500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2B01G374600.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS2D01G354300.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3A01G517500.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3B01G002000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS3D01G525000.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6A01G232200.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6B01G249400.1	AT5G48930.1	21798944
AT5G14700.1	TraesCS6D01G203000.1	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G229700.1	Wheat	cytosol	94.91	95.94
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	93.83	94.09
HORVU3Hr1G057200.1	Barley	cytosol	92.23	91.98
OQU87211	Sorghum	cytosol	63.81	84.4
Zm00001d044104_P001	Maize	cytosol	81.5	81.72
Os01t0639200-01	Rice	cytosol	82.04	80.74
Zm00001d011446_P001	Maize	cytosol	79.62	77.95
KXG22093	Sorghum	cytosol	19.57	70.87
TraesCS1D01G425400.2	Wheat	cytosol	56.57	52.1
KRH56594	Soybean	cytosol	34.05	47.39
KRG93279	Soybean	cytosol	26.81	46.95
Bra008743.1-P	Field mustard	cytosol	43.16	43.75
CDX69564	Canola	cytosol	42.9	43.48
CDY09878	Canola	cytosol	42.63	43.21
AT5G14700.1	Thale cress	cytosol	42.36	42.93
KRG93276	Soybean	cytosol	41.55	42.82
VIT_14s0066g01150.t01	Wine grape	cytosol	41.02	42.38
Bra023481.1-P	Field mustard	cytosol	41.55	42.23
CDX85588	Canola	cytosol	41.55	42.12
CDX91029	Canola	cytosol	41.29	41.96
TraesCS1D01G198500.1	Wheat	cytosol	26.27	31.82

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:Epimerase_deHydtase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607
GO:GO:0009809	GO:GO:0009987	GO:GO:0019748	GO:GO:0042742	GO:GO:0050662	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01370	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	SUPFAM:SSF51735	EnsemblPlantsGene:TraesCS3D01G223500	EnsemblPlants:TraesCS3D01G223500.1
TIGR:cd08958	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:305245264..305252108

Molecular Weight (calculated)

41007.7 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.295

Length

373 amino acids

Sequence
(BLAST)

001: MGVLRSTQSM QAEVEEMRAA LFHGGGGAAG WRPSAGDNDV KRAVDGDEGA AGPRTVCVTG GISFVGFAIV DRLLRHGYTV RLALETQEDL DKLREMEMFG
101: EDGRDGVWTV MANVMEPESL HRAFDGCTGV FHTSAFVDPG GMSGYTKHMA SLEAQAAERV IQACVRTESV RKCVFTSSLL ACVWRQNHPH ERRGPTIVDE
201: NCWSDESFCR NNKLWFALGK TAAEKAAWRA ARGRDLKLVT VCPALVTGPG FRRRNSTASI AYLKGSGVML ADGVLATANV ATVAEAHVRV YEAMGANTAG
301: GRYICYDHVI RRAEEFAELE RQLGIPSRTA ATQSVDDDDR PARFELCKRK LGRLMSSRRR CTYDDYYCPV TFQ

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.