CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH09635
KRH23680
KRH44584
KRH47315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	KRH09635	AT5G48930.1	21798944
AT5G14700.1	KRH23680	AT5G48930.1	21798944
AT5G14700.1	KRH44584	AT5G48930.1	21798944
AT5G14700.1	KRH47315	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93279	Soybean	cytosol	58.84	100.0
KRH56594	Soybean	cytosol	66.02	89.18
VIT_14s0066g01150.t01	Wine grape	cytosol	55.8	55.96
PGSC0003DMT400001401	Potato	cytosol	51.66	51.94
Solyc02g086770.2.1	Tomato	cytosol	50.83	51.11
AT5G14700.1	Thale cress	cytosol	50.55	49.73
Bra008743.1-P	Field mustard	cytosol	50.0	49.18
CDX69564	Canola	cytosol	49.72	48.91
CDY09878	Canola	cytosol	49.72	48.91
Bra023481.1-P	Field mustard	cytosol	49.17	48.5
CDX85588	Canola	cytosol	49.17	48.37
CDX91029	Canola	cytosol	48.34	47.68
OQU87211	Sorghum	cytosol	37.02	47.52
GSMUA_Achr6P23260_001	Banana	cytosol	45.58	45.45
GSMUA_Achr5P09070_001	Banana	cytosol, mitochondrion	43.65	43.65
TraesCS1A01G417800.1	Wheat	cytosol, peroxisome, plastid	43.65	43.29
Zm00001d044104_P001	Maize	cytosol	43.92	42.74
TraesCS1B01G447900.1	Wheat	cytosol, peroxisome, plastid	43.65	42.25
TraesCS3A01G229700.1	Wheat	cytosol	42.82	42.01
Zm00001d011446_P001	Maize	cytosol	44.2	41.99
Os01t0639200-01	Rice	cytosol	43.92	41.95
Os05t0578500-01	Rice	cytosol	43.92	41.95
HORVU3Hr1G057200.1	Barley	cytosol	43.09	41.71
TraesCS3D01G223500.1	Wheat	cytosol	42.82	41.55
TraesCS3B01G259000.1	Wheat	cytosol, peroxisome, plastid	42.54	41.4
EES18736	Sorghum	cytosol	41.71	41.14
Zm00001d009666_P001	Maize	cytosol	41.44	40.21
HORVU1Hr1G091400.1	Barley	cytosol	27.9	39.92
KRH45421	Soybean	cytosol	26.52	32.32
KXG22093	Sorghum	cytosol	9.12	32.04
GSMUA_Achr9P07010_001	Banana	cytosol	36.19	31.87
TraesCS1D01G425400.2	Wheat	cytosol	35.64	31.85
GSMUA_Achr6P27330_001	Banana	cytosol	29.56	31.85
KRH39555	Soybean	cytosol	26.24	31.77
KRH74401	Soybean	cytosol	25.41	30.77
HORVU1Hr1G091350.2	Barley	cytosol, plastid	18.23	24.72

Protein Annotations

EntrezGene:100819104	Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	EMBL:ACUP02011546	EnsemblPlantsGene:GLYMA_19G006900
GO:GO:0003674	GO:GO:0003824	GO:GO:0003854	GO:GO:0006629	GO:GO:0006694	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616	GO:GO:0055114	UniProt:I1N5P4
EnsemblPlants:KRG93276	ProteinID:KRG93276	ProteinID:KRG93276.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	PANTHER:PTHR10366
PANTHER:PTHR10366:SF483	SUPFAM:SSF51735	UniParc:UPI000233EFFC	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:-:686556..692466

Molecular Weight (calculated)

40342.1 Da

IEP (calculated)

7.204

GRAVY (calculated)

-0.291

Length

362 amino acids

Sequence
(BLAST)

001: MGVVRTWESR RAELEAFRRS LVAAAGIQRR KDDEGGRTHK FVSSYEHDDG KGTLICVTCG VSYFGLALVN HLLLLGYSLR VTVDNPEDIE KLREMERRGE
101: VRATEGNLEV IMAKLTDVDG LEKAFQGCRG VFHTSAFTDP AGLSGYTKSM AEIEVRAAEN VMEACARTPS ITRCVFTSSL SACVWQDNSQ SDFTPVINHA
201: SWSTESFCIE KKLWYALGKM RAEKAAWRIS NERGLKLTTI CPALITGPEF CHRNPTATIA YLKGAQEMYS QGFLASVDVT KLAEAHASVF KAMNNEASGR
301: YICFDHVIDT HSEAEKLAKD IGMPKEKICG DASNNSSIHR FELSNEKLCR IMSRPLRCYS EY

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.