CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
peroxisome 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05411
EES11073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14700.1	EES05411	AT5G48930.1	21798944
AT5G14700.1	EES11073	AT5G48930.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009666_P001	Maize	cytosol	87.47	86.06
OQU87211	Sorghum	cytosol	62.13	80.85
KXG22093	Sorghum	cytosol	18.53	66.02
KRH56594	Soybean	cytosol	34.33	47.01
KRG93279	Soybean	cytosol	26.98	46.48
VIT_14s0066g01150.t01	Wine grape	cytosol	43.87	44.6
Bra008743.1-P	Field mustard	cytosol	43.05	42.93
CDX69564	Canola	cytosol	42.78	42.66
CDY09878	Canola	cytosol	42.51	42.39
AT5G14700.1	Thale cress	cytosol	42.23	42.12
KRG93276	Soybean	cytosol	41.14	41.71
Bra023481.1-P	Field mustard	cytosol	41.42	41.42
CDX85588	Canola	cytosol	41.42	41.3
CDX91029	Canola	cytosol	41.14	41.14
EER94430	Sorghum	cytosol	27.25	30.21

Protein Annotations

Gene3D:3.40.50.720	MapMan:35.1	InterPro:3Beta_OHSteriod_DH/Estase	EntrezGene:8083802	UniProt:C5YW48	EnsemblPlants:EES18736
ProteinID:EES18736	ProteinID:EES18736.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003854	GO:GO:0006629
GO:GO:0006694	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0016491	GO:GO:0016616
GO:GO:0055114	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01073	PANTHER:PTHR10366	PANTHER:PTHR10366:SF567	EnsemblPlantsGene:SORBI_3009G243400
SUPFAM:SSF51735	UniParc:UPI0001A88790	RefSeq:XP_002440306.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:57961949..57968757

Molecular Weight (calculated)

40543.4 Da

IEP (calculated)

6.961

GRAVY (calculated)

-0.256

Length

367 amino acids

Sequence
(BLAST)

001: MGVLRSTQSL EAEVEEMRAA LLLHGAWAWR PGGGGAAKRA ARAAEPAGAE ARTVCVTGGT SFLGFAVVDC LLRHGYDVRL AIETQEDLDK LREMEMFGEN
101: GRDGVWTVIA NVMDPESLHE AFDGCVGVFH TSSLVDPGGI SGYTKHMARL EAKAAEQVVE ACVRTESVRK CVLTSSLLAC VWRQNYPHDR RFPTTIDENC
201: WSDESFCRDN KLWLSLGKTM AEKAAWRAAR GTDLKLVTIC PALVTGPGFR RRNPTPSIAY LKGAHAMLAE GLLATANVER VAEAHVRVYE EMSGTAGGRY
301: ICYDHVVRRG EEFAELQRQL GLPGRVPATP DDDDRPPRFQ LCNRKLSALM SARRRCTYDA YFPVLYE

Best Arabidopsis Sequence Match ( AT5G14700.1 )
(BLAST)

001: MRIVRATETF SAELKEFMCA AVQRRKDDDG FRGSRGGGKS RNAMDLDSDA GNRLVCVTGG VSYLGRAIVK RLLVHGYSVR IVVDCPEDKE KVSEMEADAE
101: TASFSNMITS VVSRLTEIDS LIKAFDGCAG VFHTSAFVDP AGVSGYSKSM AELEAKVSES VIEACTRTAS VRKCVFTSSL LACAWQKNPC NSLDHSVINE
201: ESWSDEQLCI DNKLWYALGK LKAEKAAWRI ADSKGLKLAT ICPALITGPD FFNRNSTSTL AYLKGAKEMY SNGLLATMDV NRLAKAHVCL WEGLGNKTAF
301: GRYICFDTIL SRDGAEKLAK DIDVQIEKIC GNSNDSDANT ETEASLQISD KKLLDLMSRT LRSCYHES

Arabidopsis Description

Cinnamoyl CoA reductase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.