CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003129_P001	Maize	mitochondrion	31.07	93.2
Os04t0500700-02	Rice	mitochondrion	89.57	89.37
TraesCS2B01G374600.1	Wheat	mitochondrion	88.44	89.04
TraesCS2D01G354300.1	Wheat	mitochondrion	87.53	88.13
TraesCS2A01G354500.1	Wheat	mitochondrion	87.53	87.33
EES05411	Sorghum	cytosol	81.41	80.13
GSMUA_Achr4P01990_001	Banana	mitochondrion	70.75	71.56
HORVU2Hr1G086380.1	Barley	cytosol, nucleus, plastid	87.98	66.67
VIT_09s0018g01190.t01	Wine grape	cytosol	64.4	66.2
AT5G48930.1	Thale cress	cytosol	64.4	65.59
KRH44584	Soybean	cytosol	63.72	65.5
CDY31956	Canola	cytosol	64.17	65.36
Bra036480.1-P	Field mustard	cytosol, peroxisome, plastid	62.81	65.33
CDY05770	Canola	cytosol	63.72	64.9
PGSC0003DMT400036695	Potato	cytosol	61.9	64.08
Solyc03g117600.2.1	Tomato	cytosol, extracellular	62.81	63.68
KRH23680	Soybean	cytosol, nucleus	63.04	63.33
Bra033526.1-P	Field mustard	mitochondrion	58.5	60.28
CDY44162	Canola	plastid	58.5	60.28
CDY22880	Canola	mitochondrion	58.5	60.28
KRH09635	Soybean	cytosol	51.02	60.16
KRH47315	Soybean	endoplasmic reticulum	63.27	60.0
EER98920	Sorghum	cytosol	39.23	39.95
EER98918	Sorghum	cytosol, peroxisome, plastid	40.14	39.07
EER89344	Sorghum	cytosol	37.64	37.99
EES07672	Sorghum	cytosol	38.78	37.92
KXG31953	Sorghum	cytosol, endoplasmic reticulum, peroxisome	37.19	37.79
EES15064	Sorghum	cytosol	37.87	37.7
KXG19490	Sorghum	cytosol	36.73	37.24
EER87979	Sorghum	cytosol	36.73	37.24
KXG31952	Sorghum	cytosol	34.01	36.14
EES15065	Sorghum	cytosol, peroxisome, plastid	36.51	36.1
KXG31858	Sorghum	peroxisome	34.69	35.42
KXG31859	Sorghum	peroxisome	34.24	34.55
EER96600	Sorghum	peroxisome	33.79	34.25
KXG31860	Sorghum	cytosol, peroxisome, plastid	33.79	34.17
OQU75613	Sorghum	cytosol, peroxisome, plastid	33.79	34.17
KXG31861	Sorghum	cytosol, peroxisome, plastid	33.79	33.86
EES02456	Sorghum	cytosol, peroxisome, plastid	33.79	32.89
EES02467	Sorghum	cytosol, peroxisome, plastid	31.75	31.32
KXG31863	Sorghum	plastid	25.62	30.21
OQU86302	Sorghum	mitochondrion	16.78	30.2
OQU83825	Sorghum	peroxisome, plastid	28.34	28.22
OQU91195	Sorghum	cytosol	28.57	27.51
OQU89853	Sorghum	cytosol	27.44	27.31
EES10710	Sorghum	cytosol	26.08	25.11
EER88164	Sorghum	cytosol	18.37	23.34
EES09214	Sorghum	cytosol, peroxisome, plastid	23.36	22.74

Protein Annotations

EnsemblPlants:EES11073	EnsemblPlantsGene:SORBI_3006G136800	EntrezGene:8075889	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31642
PANTHER:PTHR31642:SF116	PFAM:PF02458	ProteinID:EES11073	ProteinID:EES11073.1	RefSeq:XP_002446745.1	unigene:Sbi.19146
UniParc:UPI0001A86D76	UniProt:C5YBJ0	MapMan:21.6.1.1	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:49923688..49929393

Molecular Weight (calculated)

48276.9 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.078

Length

441 amino acids

Sequence
(BLAST)

001: MVITVRRSTM VRPARETPRQ RLWNSNLDLV VPRFHTPSVY FYRRGDGAAA PAEGFFDGER MRRALAEALV PFYPMAGRLA RDEDGRVEID CNGEGVLFVE
101: ADAPDVSVDD YGDFAPTMDL KRLIPTVDYT DDISAFPLLV LQVTHFKCGG ISLGVGMQHH VADGMSGLHF INSWSDLCRG AQISVMPFID RTLIRARDPP
201: TPSFHHIEYQ PAPAILSSTP QFLASKSKPP ATAVDIFKLT RSDLGRLRSQ LAAGEGAPRF STYAVLAAHV WKCVSLARSL PPEQPTKLYC ATDGRQRLQP
301: PLPDGYFGNV IFTATPLAEA GKVTSGLAEG AAVIQGALDR MDNDYCRSAL DYLELQPDLS ALVRGAHTFR CPNLGLTSWV RLPIHDADFG WGRPVFMGPG
401: GIAYEGLAFV LPSANGDGSL SIAISLQAEH MEKFRKLICE V

Best Arabidopsis Sequence Match ( AT5G48930.1 )
(BLAST)

001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI

Arabidopsis Description

HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.