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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, peroxisome
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra036480.1-P Field mustard cytosol, peroxisome, plastid 97.69 99.76
CDY05770 Canola cytosol 98.38 98.38
AT5G48930.1 Thale cress cytosol 94.23 94.23
CDY22880 Canola mitochondrion 81.99 82.94
CDY44162 Canola plastid 81.99 82.94
VIT_09s0018g01190.t01 Wine grape cytosol 78.52 79.25
Solyc03g117600.2.1 Tomato cytosol, extracellular 78.52 78.16
KRH44584 Soybean cytosol 77.37 78.09
PGSC0003DMT400036695 Potato cytosol 76.44 77.7
KRH23680 Soybean cytosol, nucleus 75.29 74.26
KRH47315 Soybean endoplasmic reticulum 75.98 70.75
KRH09635 Soybean cytosol 60.05 69.52
GSMUA_Achr5P04550_001 Banana cytosol 66.97 69.21
GSMUA_Achr4P01990_001 Banana mitochondrion 67.9 67.43
GSMUA_Achr10P... Banana mitochondrion 66.05 65.0
Os04t0500700-02 Rice mitochondrion 66.05 64.71
TraesCS2D01G354300.1 Wheat mitochondrion 65.13 64.38
Os02t0611800-01 Rice plasma membrane 65.59 64.25
EES11073 Sorghum mitochondrion 65.36 64.17
TraesCS2B01G374600.1 Wheat mitochondrion 64.9 64.16
Zm00001d017186_P001 Maize extracellular 65.82 63.9
TraesCS6D01G203000.1 Wheat cytosol 65.13 63.8
TraesCS6B01G249400.1 Wheat cytosol, golgi 64.9 63.72
TraesCS2A01G354500.1 Wheat mitochondrion 64.9 63.57
TraesCS6A01G232200.1 Wheat cytosol 64.9 63.57
HORVU6Hr1G056230.2 Barley cytosol 64.67 63.49
Zm00001d003129_P001 Maize mitochondrion 21.48 63.27
EES05411 Sorghum cytosol 65.13 62.95
TraesCS1D01G021600.1 Wheat mitochondrion 60.05 58.96
TraesCS3B01G002000.1 Wheat mitochondrion 58.66 58.26
TraesCS3D01G525000.1 Wheat mitochondrion 59.12 57.92
HORVU1Hr1G081430.3 Barley cytosol, peroxisome, plastid 50.81 57.74
TraesCS3A01G517500.1 Wheat mitochondrion 58.89 57.17
TraesCS1B01G005300.1 Wheat mitochondrion 46.88 51.01
HORVU2Hr1G086380.1 Barley cytosol, nucleus, plastid 64.9 48.28
CDX88645 Canola cytosol, golgi, nucleus 43.42 42.25
CDX88644 Canola cytosol 41.8 40.77
CDY56515 Canola cytosol 33.26 37.89
CDY62143 Canola cytosol 33.26 37.89
CDY66506 Canola cytosol 37.64 36.88
CDY03367 Canola cytosol 36.49 35.03
CDY11845 Canola cytosol 39.95 18.19
Protein Annotations
EnsemblPlants:CDY31956EnsemblPlantsGene:GSBRNA2T00050746001Gene3D:3.30.559.10GO:A0A078H2D0GO:GO:0003674GO:GO:0003824
GO:GO:0016740GO:GO:0016747InterPro:CAT-like_dom_sfInterPro:IPR023213InterPro:TransferasePANTHER:PTHR31642
PANTHER:PTHR31642:SF116PFAM:PF02458ProteinID:CDY31956ProteinID:CDY31956.1UniParc:UPI0004EEADBCUniProt:A0A078H2D0
MapMan:21.6.1.1:::::
Description
BnaA07g00390DBnaA07g00390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H2D0]
Coordinates
chrLK032283:+:161656..163660
Molecular Weight (calculated)
47835.3 Da
IEP (calculated)
6.133
GRAVY (calculated)
-0.130
Length
433 amino acids
Sequence
(BLAST)
001: MKINIRDSTM VRPAGETPST YLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPGVMKEAL AKALVPFYPM AGRLKRDDDG RIEIDCNAAG VLFVVADTPS
101: LIDDFGDFAP TLDLRQLIPD VDHSPGIHSF PLLVLQVTYF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFDH
201: VEYQPAPSMK IPLDPSKSSP DSTTVSIFKL SRDQLVSLKA KAKEDGNTVS YSSYEMLAGH VWRSVGKARG LPDDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGLIHDVL ARMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQT EHMKLFEKYL YEI
Best Arabidopsis Sequence Match ( AT5G48930.1 )
(BLAST)
001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI
Arabidopsis Description
HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.