CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57840.1	CDY11941	AT5G56290.1	21798944
AT5G57840.1	CDY20736	AT5G56290.1	21798944
AT5G57840.1	CDY36789	AT5G56290.1	21798944
AT5G57840.1	CDY49390	AT5G56290.1	21798944
AT5G57840.1	CDY66434	AT5G56290.1	21798944
AT5G57840.1	CDY66435	AT5G56290.1	21798944
AT5G57840.1	CDY67858	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006796.1-P	Field mustard	cytosol, golgi, nucleus	97.98	97.32
CDX88644	Canola	cytosol	86.07	86.26
AT5G57840.1	Thale cress	cytosol	77.08	77.43
Solyc07g005760.2.1	Tomato	cytosol	43.37	44.88
PGSC0003DMT400029079	Potato	cytosol	36.18	44.72
VIT_11s0037g00440.t01	Wine grape	cytosol	42.7	43.88
CDY22880	Canola	mitochondrion	42.02	43.69
CDY44162	Canola	plastid	42.02	43.69
CDY31956	Canola	cytosol	42.25	43.42
CDY05770	Canola	cytosol	42.02	43.19
CDY11845	Canola	cytosol	85.39	39.96
CDY66506	Canola	cytosol	31.01	31.22
CDY56515	Canola	cytosol	26.52	31.05
CDY62143	Canola	cytosol	26.52	31.05
CDY03367	Canola	cytosol	30.34	29.93

Protein Annotations

EnsemblPlants:CDX88645	EnsemblPlantsGene:GSBRNA2T00148687001	Gene3D:3.30.559.10	GO:A0A078DHI1	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31642
PANTHER:PTHR31642:SF66	PFAM:PF02458	ProteinID:CDX88645	ProteinID:CDX88645.1	UniParc:UPI0004EED47D	MapMan:50.2.3

Description

BnaA03g10040D

Coordinates

chrLK031856:-:332855..334617

Molecular Weight (calculated)

49904.4 Da

IEP (calculated)

7.516

GRAVY (calculated)

-0.047

Length

445 amino acids

Sequence
(BLAST)

001: MKIRVKQASI VKPAEETPIH SLWLSNLDLI QVRFHMGILY FCHPCASSSI PNSQSLIDAL RKVLVLFYPA AGRLQKDKNG RLEVLCSGEG VLLVEAETDS
101: TIQDVGLLTQ ALDLSELVPT LAYSGDISSL PLLLFQVTYF KCGAICIGTL IHHTFGDAGS LTCFMEAWSR TARGLPVTPT PFFDRTILRA RDPPSPVFPH
201: TEYQPPPFYN PPVTSLAYKS NPDSDSGVVS LKLTRLQLRA LRAKTEVANH KSISTYELLV AHIWRCACFA NEDLREEHLT RLHIILDGRS RLEPKLPQGY
301: IGNALFHARP ISLLGDLLRE PFSTTVERVH GEIRKMDNEY LRSAIDCLER HPDLDQLVPG EGNPIFSCAA NFCIVSLRKD TSAYELDFGW GKPFFKRTSH
401: LNEGKGFVGM SLDEEGSFIV FMCLKKTQLS KFRKLFYEFL NVSAL

Best Arabidopsis Sequence Match ( AT5G57840.1 )
(BLAST)

001: MKIRVKQATI VKPAEETPTH NLWLSNLDLI QVRLHMGTLY FYKPCSSSDR PNTQSLIEAL SKVLVFFYPA AGRLQKNTNG RLEVQCNGEG VLFVEAESDS
101: TVQDIGLLTQ SLDLSQLVPT VDYAGDISSY PLLLFQVTYF KCGTICVGSS IHHTFGEATS LGYIMEAWSL TARGLLVKLT PFLDRTVLHA RNPPSSVFPH
201: TEYQSPPFHN HPMKSLAYRS NPESDSAIAT LKLTRLQLKA LKARAEIADS KFSTYEVLVA HTWRCASFAN EDLSEEHSTR LHIIIDGRPR LQPKLPQGYI
301: GNTLFHARPV SPLGAFHRES FSETVERVHR EIRKMDNEYL RSAIDYLERH PDLDQLVPGE GNTIFSCAAN FCIVSLIKQT AYEMDFGWGK AYYKRASHLN
401: EGKGFVTGNP DEEGSMMLTM CLKKTQLSKF RKLFYEFLNV SAL

Arabidopsis Description

AT5g57840/MTI20_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.