Factsheet for VIT_11s0037g00440.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0015g01940.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57840.1	VIT_19s0015g01940.t01	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0018g01190.t01	Wine grape	cytosol	56.81	57.34
Solyc07g005760.2.1	Tomato	cytosol	55.43	55.81
PGSC0003DMT400029079	Potato	cytosol	44.8	53.89
CDX88645	Canola	cytosol, golgi, nucleus	43.88	42.7
Bra006796.1-P	Field mustard	cytosol, golgi, nucleus	43.88	42.41
CDX88644	Canola	cytosol	42.73	41.67
AT5G57840.1	Thale cress	cytosol	42.26	41.31
Bra006797.1-P	Field mustard	cytosol	42.26	41.31
VIT_11s0103g00200.t01	Wine grape	cytosol	40.88	38.82
VIT_11s0037g00570.t01	Wine grape	mitochondrion	37.41	36.4
VIT_11s0037g00580.t01	Wine grape	mitochondrion	37.64	35.67
CDY11845	Canola	cytosol	39.49	17.98

Protein Annotations

EntrezGene:100250237	wikigene:100250237	Gene3D:3.30.559.10	MapMan:50.2.3	InterPro:CAT-like_dom_sf	ProteinID:CBI36545
ProteinID:CBI36545.3	UniProt:D7U1C9	EMBL:FN596499	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:IPR023213	EntrezGene:LOC100250237	wikigene:LOC100250237	PFAM:PF02458	PANTHER:PTHR31642
PANTHER:PTHR31642:SF118	InterPro:Transferase	UniParc:UPI0001984489	ArrayExpress:VIT_11s0037g00440	EnsemblPlantsGene:VIT_11s0037g00440	EnsemblPlants:VIT_11s0037g00440.t01
RefSeq:XP_002277474	RefSeq:XP_002277474.1	:	:	:	:

Description

No Description!

Coordinates

chr11:-:8236200..8237855

Molecular Weight (calculated)

48044.0 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.101

Length

433 amino acids

Sequence
(BLAST)

001: MKIEVKKWSM VCPAKHTPKH TLWMSNLDSV VPRIHVPTVY LYKPNAFCSN FFDASRLKEA LSNALVQFYP VAGRLGLDAN GRIQINCNGE GVLFQEAEAD
101: AIIDDLGDFT PSHRLRHLIP VVDHSAHISS YPLLLLQVTY FKCGGVCLGV AIHHMVADGS GCIHFINSWS DITRGIPIAI SPFFDRTILR ARDPPAPRFS
201: HVEYLPPPPL HGPSTLKPTS TLILHLTPEH LNALKAKSVR HGSPSPSSVK YSTYETLAAH LWRCICKARG LSHDQPTKLY IPTDGRLRLR PTLPPGYFGN
301: ALFTSTLTAN SGDLQSEAFS DTVQRIRNAI AGMEDEYLRS AVDYLEMQPN LTALVRGAHT FRSPNLVVGS WTRLPIHDAN FGWGRPMHMG LGSGVFEGNA
401: CIQRSPTKDN HLSVVICLEA QPMQLFKDLL YDI

Best Arabidopsis Sequence Match ( AT5G48930.1 )
(BLAST)

001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI

Arabidopsis Description

HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.