Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88644 | Canola | cytosol | 78.33 | 78.15 |
| Bra006797.1-P | Field mustard | cytosol | 77.88 | 77.88 |
| CDX88645 | Canola | cytosol, golgi, nucleus | 77.43 | 77.08 |
| Bra006796.1-P | Field mustard | cytosol, golgi, nucleus | 77.88 | 77.01 |
| Solyc07g005760.2.1 | Tomato | cytosol | 43.79 | 45.12 |
| PGSC0003DMT400029079 | Potato | cytosol | 35.89 | 44.17 |
| VIT_11s0037g00440.t01 | Wine grape | cytosol | 41.31 | 42.26 |
| AT5G48930.1 | Thale cress | cytosol | 39.73 | 40.65 |
| CDY11845 | Canola | cytosol | 71.78 | 33.44 |
| AT2G19070.1 | Thale cress | cytosol | 32.28 | 31.71 |
Protein Annotations
| Gene3D:3.30.559.10 | MapMan:50.2.3 | EntrezGene:835894 | ProteinID:AED96958.1 | EMBL:AF410317 | ArrayExpress:AT5G57840 |
| EnsemblPlantsGene:AT5G57840 | RefSeq:AT5G57840 | TAIR:AT5G57840 | RefSeq:AT5G57840-TAIR-G | EnsemblPlants:AT5G57840.1 | TAIR:AT5G57840.1 |
| EMBL:AY149921 | Unigene:At.26522 | ProteinID:BAB08854.1 | InterPro:CAT-like_dom_sf | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0016740 | GO:GO:0016747 | InterPro:IPR023213 | RefSeq:NP_200592.1 | PFAM:PF02458 |
| PO:PO:0000293 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0025281 |
| PANTHER:PTHR31642 | PANTHER:PTHR31642:SF66 | UniProt:Q9FJN0 | InterPro:Transferase | UniParc:UPI0000048C92 | : |
Description
AT5g57840/MTI20_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJN0]
Coordinates
chr5:-:23432790..23435266
Molecular Weight (calculated)
49952.9 Da
IEP (calculated)
7.841
GRAVY (calculated)
-0.232
Length
443 amino acids
Sequence
(BLAST)
(BLAST)
001: MKIRVKQATI VKPAEETPTH NLWLSNLDLI QVRLHMGTLY FYKPCSSSDR PNTQSLIEAL SKVLVFFYPA AGRLQKNTNG RLEVQCNGEG VLFVEAESDS
101: TVQDIGLLTQ SLDLSQLVPT VDYAGDISSY PLLLFQVTYF KCGTICVGSS IHHTFGEATS LGYIMEAWSL TARGLLVKLT PFLDRTVLHA RNPPSSVFPH
201: TEYQSPPFHN HPMKSLAYRS NPESDSAIAT LKLTRLQLKA LKARAEIADS KFSTYEVLVA HTWRCASFAN EDLSEEHSTR LHIIIDGRPR LQPKLPQGYI
301: GNTLFHARPV SPLGAFHRES FSETVERVHR EIRKMDNEYL RSAIDYLERH PDLDQLVPGE GNTIFSCAAN FCIVSLIKQT AYEMDFGWGK AYYKRASHLN
401: EGKGFVTGNP DEEGSMMLTM CLKKTQLSKF RKLFYEFLNV SAL
101: TVQDIGLLTQ SLDLSQLVPT VDYAGDISSY PLLLFQVTYF KCGTICVGSS IHHTFGEATS LGYIMEAWSL TARGLLVKLT PFLDRTVLHA RNPPSSVFPH
201: TEYQSPPFHN HPMKSLAYRS NPESDSAIAT LKLTRLQLKA LKARAEIADS KFSTYEVLVA HTWRCASFAN EDLSEEHSTR LHIIIDGRPR LQPKLPQGYI
301: GNTLFHARPV SPLGAFHRES FSETVERVHR EIRKMDNEYL RSAIDYLERH PDLDQLVPGE GNTIFSCAAN FCIVSLIKQT AYEMDFGWGK AYYKRASHLN
401: EGKGFVTGNP DEEGSMMLTM CLKKTQLSKF RKLFYEFLNV SAL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.