Factsheet for Solyc07g005760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57840.1	Solyc10g005650.2.1	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029079	Potato	cytosol	76.51	91.39
Solyc03g117600.2.1	Tomato	cytosol, extracellular	59.3	58.62
VIT_11s0037g00440.t01	Wine grape	cytosol	55.81	55.43
AT5G57840.1	Thale cress	cytosol	45.12	43.79
CDX88644	Canola	cytosol	45.12	43.69
Bra006797.1-P	Field mustard	cytosol	44.88	43.57
Bra006796.1-P	Field mustard	cytosol, golgi, nucleus	45.35	43.53
CDX88645	Canola	cytosol, golgi, nucleus	44.88	43.37
Solyc11g066640.1.1	Tomato	cytosol	33.72	33.03
Solyc07g015960.1.1	Tomato	cytosol	34.42	32.82
Solyc06g074710.1.1	Tomato	cytosol	32.56	31.53
Solyc11g071470.1.1	Tomato	cytosol	30.93	30.02
Solyc11g071480.1.1	Tomato	cytoskeleton, cytosol, peroxisome	30.93	30.02
CDY11845	Canola	cytosol	41.63	18.82

Protein Annotations

EMBL:KY450711	EnsemblPlants:Solyc07g005760.2.1	EnsemblPlantsGene:Solyc07g005760.2	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0047205	InterPro:CAT-like_dom_sf	InterPro:IPR023213
InterPro:Transferase	PANTHER:PTHR31642	PANTHER:PTHR31642:SF66	PFAM:PF02458	SUPFAM:SSF52777	UniParc:UPI000276BFCA
UniProt:K4CB47	MapMan:50.2.3	:	:	:	:

Description

No Description!

Coordinates

chr7:-:607977..611742

Molecular Weight (calculated)

47893.6 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.197

Length

430 amino acids

Sequence
(BLAST)

001: MGSEKMMKIN IKESTLVKPS KPTPTKRIWS SNLDLIVGRI HLLTVYFYKP NGSSNFFDNK VIKEALSNVL VSFYPMAGRL GRDEQGRIEV NCNGEGVLFV
101: EAESDSCVDD FGDFTPSLEL RKLIPSVETS GDISTFPLVI FQITRFKCGG VALGGGVFHT LSDGLSSIHF INTWSDIARG LSVAVPPFID RTLLRARDPP
201: TSSFEHVEYH PPPTLNSSKN RESSTTTMLK FSSEQLGLLK SKSKNEGSTY EILAAHIWRC TCKARGLPED QLTKLHVATD GRSRLCPPLP PGYLGNVVFT
301: ATPIAKSCEL QSEPLTNSVK RIHNELIKMD DNYLRSALDY LELQPDLSTL IRGPAYFASP NLNINSWTRL PVHECDFGWG RPIHMGPACI LYEGTIYIIP
401: SPNSKDRNLR LAVCLDAGHM SLFEKYLYEL

Best Arabidopsis Sequence Match ( AT5G48930.1 )
(BLAST)

001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI

Arabidopsis Description

HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.