Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 3
  • mitochondrion 1
  • cytoskeleton 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g071480.1.1 Tomato cytoskeleton, cytosol, peroxisome 92.78 92.78
PGSC0003DMT400048126 Potato cytosol 83.3 81.82
PGSC0003DMT400048130 Potato cytoskeleton, cytosol, peroxisome 95.03 73.99
Solyc06g074710.1.1 Tomato cytosol 66.82 66.67
Solyc11g066640.1.1 Tomato cytosol 65.46 66.06
GSMUA_Achr8P15170_001 Banana cytosol 45.82 52.59
GSMUA_Achr8P03170_001 Banana cytosol 44.47 52.39
Os04t0664500-01 Rice cytosol 14.45 51.2
TraesCS5D01G342800.1 Wheat cytosol 50.34 50.8
TraesCS5A01G338700.1 Wheat cytosol 49.89 50.34
TraesCS5A01G338600.1 Wheat cytosol 50.11 50.34
TraesCS5B01G337000.1 Wheat cytosol 49.89 50.11
TraesCS5B01G337100.1 Wheat cytosol 49.44 49.66
TraesCS5D01G342700.1 Wheat cytosol 49.44 49.66
TraesCS5A01G304000.1 Wheat cytosol, mitochondrion, peroxisome, plastid 48.53 49.65
HORVU3Hr1G027720.1 Barley cytosol 14.0 49.6
OQU91195 Sorghum cytosol 51.02 49.34
TraesCS5A01G337800.1 Wheat cytosol 48.08 49.08
Os04t0664600-00 Rice cytosol 49.66 49.0
GSMUA_Achr8P03210_001 Banana cytosol 38.83 48.86
TraesCS5D01G342400.1 Wheat cytosol, golgi, plastid 47.86 48.85
TraesCS5A01G337700.1 Wheat cytosol 47.86 48.85
Os09t0543900-01 Rice cytosol 48.08 48.74
Zm00001d033521_P001 Maize cytosol 49.89 48.68
HORVU2Hr1G109430.2 Barley cytosol 48.08 48.63
TraesCS5D01G310800.1 Wheat cytosol 47.86 48.62
TraesCS5B01G304300.1 Wheat cytosol 47.86 48.62
TraesCS5B01G336600.1 Wheat cytosol 47.63 48.62
TraesCS5B01G336300.1 Wheat cytosol 47.63 48.62
OQU89853 Sorghum cytosol 48.53 48.53
GSMUA_Achr8P03190_001 Banana cytosol 37.92 48.41
TraesCS5A01G337900.1 Wheat cytosol 47.4 48.39
TraesCS5B01G336700.1 Wheat cytosol 47.4 48.39
TraesCS5D01G342100.1 Wheat cytosol 47.4 48.39
HORVU5Hr1G084820.2 Barley cytosol 47.4 48.39
HORVU5Hr1G084810.1 Barley cytosol 46.73 48.25
TraesCS5D01G342300.1 Wheat cytosol 47.18 48.16
TraesCS5A01G337500.1 Wheat cytosol 47.18 48.16
TraesCS5B01G336500.1 Wheat cytosol 47.18 48.16
GSMUA_Achr8P03200_001 Banana cytosol 37.47 48.12
Zm00001d021329_P001 Maize cytosol 48.76 48.11
Zm00001d006263_P001 Maize cytosol 48.31 48.09
HORVU2Hr1G109590.1 Barley cytosol 34.99 47.99
TraesCS2B01G519100.1 Wheat cytosol 47.63 47.95
TraesCS4D01G024500.1 Wheat cytosol 48.31 47.87
Zm00001d021324_P001 Maize cytosol 47.86 47.75
GSMUA_Achr8P03180_001 Banana plastid 44.02 47.68
TraesCS2D01G490900.1 Wheat cytosol 47.4 47.62
HORVU5Hr1G077720.1 Barley mitochondrion 46.73 47.48
HORVU5Hr1G079580.1 Barley mitochondrion 46.73 47.48
TraesCS2D01G490400.1 Wheat cytosol 47.18 47.39
TraesCS2B01G518900.1 Wheat cytosol 47.18 47.39
TraesCS2B01G518300.1 Wheat cytosol 47.18 47.39
TraesCS2A01G490000.1 Wheat cytosol 47.18 47.39
Os09t0544000-01 Rice cytosol 48.31 47.35
TraesCS4B01G026800.1 Wheat cytosol 47.4 47.19
HORVU4Hr1G004050.1 Barley cytosol 47.18 47.07
TraesCS7B01G410100.1 Wheat cytosol 46.73 47.05
HORVU5Hr1G084980.1 Barley cytosol 49.21 46.98
TraesCS2D01G491100.1 Wheat cytosol 46.73 46.94
TraesCS6B01G430300.1 Wheat cytosol 46.95 46.22
TraesCS6D01G359800.1 Wheat peroxisome 45.82 46.14
EES10710 Sorghum cytosol 47.63 46.07
Zm00001d022592_P001 Maize cytosol 46.28 46.07
Zm00001d006260_P001 Maize cytosol 42.21 46.06
Zm00001d003856_P001 Maize cytosol 46.5 45.98
TraesCS6B01G412900.1 Wheat peroxisome 45.15 45.35
TraesCSU01G241400.1 Wheat mitochondrion 15.8 44.87
TraesCS4A01G287700.1 Wheat mitochondrion 15.8 44.87
TraesCS6A01G375300.1 Wheat mitochondrion 45.37 44.37
TraesCS4A01G287500.1 Wheat cytosol 45.6 43.44
TraesCS4A01G285200.1 Wheat cytosol 45.6 43.44
TraesCSU01G244500.1 Wheat cytosol 17.83 43.41
HORVU6Hr1G088480.1 Barley extracellular, plasma membrane 45.15 42.46
TraesCS2B01G604000.1 Wheat cytosol 42.44 42.44
HORVU6Hr1G088530.1 Barley cytosol 15.8 42.42
Zm00001d048870_P001 Maize peroxisome 43.34 42.2
TraesCS2A01G490700.1 Wheat plastid 47.4 41.92
TraesCS2D01G016600.1 Wheat cytosol 44.02 41.76
TraesCS3D01G545300.1 Wheat cytosol 42.21 41.46
Zm00001d007606_P001 Maize peroxisome 43.12 40.9
Zm00001d048872_P001 Maize cytosol 42.21 40.48
TraesCS2B01G604100.1 Wheat peroxisome 40.41 39.78
Zm00001d048871_P001 Maize peroxisome 41.53 39.66
HORVU2Hr1G109470.1 Barley cytosol 17.61 39.39
OQU83825 Sorghum peroxisome, plastid 38.83 38.83
EER88164 Sorghum cytosol 29.57 37.75
Os05t0116800-00 Rice cytosol, plastid, vacuole 31.83 34.73
HORVU2Hr1G002500.2 Barley cytosol 40.86 32.26
Solyc07g005760.2.1 Tomato cytosol 30.02 30.93
Solyc03g117600.2.1 Tomato cytosol, extracellular 29.12 29.66
Solyc07g015960.1.1 Tomato cytosol 26.64 26.16
HORVU2Hr1G124070.1 Barley cytosol 14.67 21.67
Protein Annotations
EnsemblPlants:Solyc11g071470.1.1EnsemblPlantsGene:Solyc11g071470.1Gene3D:3.30.559.10GO:GO:0003674GO:GO:0003824GO:GO:0016740
GO:GO:0016747InterPro:CAT-like_dom_sfInterPro:IPR023213InterPro:TransferasePANTHER:PTHR31642PANTHER:PTHR31642:SF13
PFAM:PF02458SEG:segUniParc:UPI00027696C1UniProt:K4DAK4MapMan:50.2.3:
Description
No Description!
Coordinates
chr11:+:54930183..54931514
Molecular Weight (calculated)
50292.7 Da
IEP (calculated)
7.035
GRAVY (calculated)
-0.144
Length
443 amino acids
Sequence
(BLAST)
001: MNVKIESSKI IKPLYEGIPP STTIHIPFNV FDNVTFDTLM ALIYAYRPPT PPTSTIETGL RKTLSIYREW AGRIGEDEHG NRGVFLNDEG VRFIEASVDA
101: SLDEVLPLKP SPSMLSLHPS LKDVVELIQV QVTRFTCGSV VVGFTGHHMI ADGHAASNFF VAWGQACRGM EITPIPMNDR AIFRPRNPPL VEYNHVGAEF
201: VSKLVNKELV KINNDQDKEK NIIVHKVHFT LEFLGKLKAH ASFMNGKAKT YSTFESLIAH LWRVITNSRN LNASQNTQIR ISVDGRRRIT PRVPDEFFGN
301: MVLWAFPTSK VKDLLDEPLH YATKIIHEAI TKVDDKYFKS FIDFANDEKV MTRQDLIPSA NMKNDSLCPN LEVDSWLRFP FYDLDFGTGC PFLFMPSYYP
401: IEGMMFLVPS FIGDGSIDAF IPLYEHNLTN FKKICYSLDL KAK
Best Arabidopsis Sequence Match ( AT2G19070.1 )
(BLAST)
001: MAPITFRKSY TIVPAEPTWS GRFPLAEWDQ VGTITHIPTL YFYDKPSESF QGNVVEILKT SLSRVLVHFY PMAGRLRWLP RGRFELNCNA EGVEFIEAES
101: EGKLSDFKDF SPTPEFENLM PQVNYKNPIE TIPLFLAQVT KFKCGGISLS VNVSHAIVDG QSALHLISEW GRLARGEPLE TVPFLDRKIL WAGEPLPPFV
201: SPPKFDHKEF DQPPFLIGET DNVEERKKKT IVVMLPLSTS QLQKLRSKAN GSKHSDPAKG FTRYETVTGH VWRCACKARG HSPEQPTALG ICIDTRSRME
301: PPLPRGYFGN ATLDVVAAST SGELISNELG FAASLISKAI KNVTNEYVMI GIEYLKNQKD LKKFQDLHAL GSTEGPFYGN PNLGVVSWLT LPMYGLDFGW
401: GKEFYTGPGT HDFDGDSLIL PDQNEDGSVI LATCLQVAHM EAFKKHFYED I
Arabidopsis Description
SHTSpermidine hydroxycinnamoyl transferase [Source:UniProtKB/Swiss-Prot;Acc:O64470]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.