Factsheet for TraesCS6A01G375300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G412900.1	Wheat	peroxisome	91.17	93.65
TraesCS6D01G359800.1	Wheat	peroxisome	89.85	92.5
HORVU6Hr1G088530.1	Barley	cytosol	30.46	83.64
HORVU6Hr1G088480.1	Barley	extracellular, plasma membrane	86.09	82.8
TraesCS2A01G490000.1	Wheat	cytosol	64.02	65.76
TraesCS2A01G490700.1	Wheat	plastid	65.56	59.28
OQU83825	Sorghum	peroxisome, plastid	54.97	56.21
GSMUA_Achr8P03170_001	Banana	cytosol	43.93	52.93
TraesCS4A01G287700.1	Wheat	mitochondrion	17.44	50.64
Solyc11g066640.1.1	Tomato	cytosol	48.57	50.11
PGSC0003DMT400001145	Potato	cytosol	48.79	50.11
GSMUA_Achr8P15170_001	Banana	cytosol	41.72	48.96
PGSC0003DMT400018441	Potato	cytosol	47.9	48.76
GSMUA_Achr8P03210_001	Banana	cytosol	37.75	48.58
TraesCS5A01G304000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	46.14	48.27
Solyc06g074710.1.1	Tomato	cytosol	47.02	47.97
GSMUA_Achr8P03180_001	Banana	plastid	43.27	47.92
GSMUA_Achr8P03190_001	Banana	cytosol	36.64	47.84
GSMUA_Achr8P03200_001	Banana	cytosol	36.42	47.83
TraesCS5A01G337500.1	Wheat	cytosol	44.37	46.31
TraesCS5A01G338700.1	Wheat	cytosol	44.81	46.24
TraesCS5A01G338600.1	Wheat	cytosol	44.59	45.8
TraesCS5A01G337700.1	Wheat	cytosol	43.71	45.62
Solyc11g071470.1.1	Tomato	cytosol	44.37	45.37
Solyc11g071480.1.1	Tomato	cytoskeleton, cytosol, peroxisome	44.15	45.15
TraesCS5A01G337800.1	Wheat	cytosol	43.05	44.93
TraesCS5A01G337900.1	Wheat	cytosol	42.6	44.47
TraesCS4A01G285200.1	Wheat	cytosol	45.25	44.09
TraesCS4A01G287500.1	Wheat	cytosol	45.03	43.87
PGSC0003DMT400048126	Potato	cytosol	38.85	39.02
TraesCS7A01G023200.1	Wheat	plastid	23.18	36.84
TraesCS4A01G003300.1	Wheat	cytosol, extracellular, peroxisome	34.66	36.43
TraesCS5A01G549100.1	Wheat	cytosol	20.53	35.91
TraesCS1A01G088400.1	Wheat	cytosol	34.66	35.84
TraesCS1A01G088300.1	Wheat	cytosol	34.66	35.84
TraesCS4A01G002900.1	Wheat	cytosol, extracellular, peroxisome	24.06	35.62
TraesCS4A01G003400.1	Wheat	cytosol	33.33	35.61
PGSC0003DMT400048130	Potato	cytoskeleton, cytosol, peroxisome	44.37	35.33
TraesCS2A01G570600.1	Wheat	cytosol	34.0	35.08
TraesCS7A01G148300.1	Wheat	peroxisome	33.55	34.16
TraesCS4A01G003100.1	Wheat	peroxisome	33.77	33.92
TraesCS6A01G292100.1	Wheat	cytosol	32.89	33.63
TraesCS5A01G137500.1	Wheat	plastid	33.33	33.56
TraesCS2A01G354500.1	Wheat	mitochondrion	29.8	30.54
TraesCS6A01G232200.1	Wheat	cytosol	29.8	30.54
TraesCS3A01G517500.1	Wheat	mitochondrion	29.14	29.6
TraesCS5A01G222700.1	Wheat	cytosol	28.04	29.2
TraesCS7A01G150200.1	Wheat	cytosol	27.37	28.9
KRH02826	Soybean	cytosol	28.7	28.57
TraesCS6A01G336100.1	Wheat	cytosol	26.05	28.03
TraesCS7A01G537300.1	Wheat	cytosol	26.71	27.82
Bra024450.1-P	Field mustard	cytosol	23.18	27.63
CDY56515	Canola	cytosol	23.18	27.63
CDY62143	Canola	cytosol	23.18	27.63
TraesCS7A01G150000.1	Wheat	cytosol	26.27	27.61
TraesCS5A01G222900.1	Wheat	cytosol	19.43	27.5
VIT_11s0103g00200.t01	Wine grape	cytosol	27.37	27.19
AT2G19070.1	Thale cress	cytosol	26.49	26.61
TraesCS2A01G040800.1	Wheat	cytosol	26.49	26.55
KRH02825	Soybean	cytosol	26.93	26.52
TraesCS6A01G022900.1	Wheat	cytosol, plasma membrane, plastid	17.66	26.49
KRH46099	Soybean	cytosol, plastid	26.05	26.11
VIT_11s0037g00570.t01	Wine grape	mitochondrion	25.61	26.07
KRH53324	Soybean	cytosol	13.69	25.62
CDY66506	Canola	cytosol	24.94	25.57
TraesCS3A01G506800.1	Wheat	peroxisome	24.94	25.34
KRH08423	Soybean	cytosol	24.72	25.06
Bra038561.1-P	Field mustard	cytosol	24.94	25.06
CDY03367	Canola	cytosol	24.94	25.06
KRH32575	Soybean	cytosol	24.72	25.0
TraesCS6A01G260900.1	Wheat	peroxisome	24.06	24.89
KRH06686	Soybean	peroxisome	25.39	24.73
VIT_11s0037g00580.t01	Wine grape	mitochondrion	24.94	24.73
TraesCS3A01G507100.1	Wheat	peroxisome	23.18	24.71
KRH32581	Soybean	cytosol	23.4	24.65
KRG98872	Soybean	cytosol, peroxisome, plastid	25.17	24.46
KRG89744	Soybean	cytosol	24.94	24.35
TraesCS7A01G018100.1	Wheat	cytosol	21.63	24.26
KRG98999	Soybean	mitochondrion, peroxisome, plastid	25.39	23.96
TraesCS4A01G473500.1	Wheat	mitochondrion, plastid	25.17	23.7
TraesCS6A01G022100.1	Wheat	peroxisome	24.06	23.59
KRG98873	Soybean	mitochondrion	24.06	23.59
KRH06685	Soybean	plastid	23.62	23.31
KRH46094	Soybean	plastid	23.62	23.01
KRH70082	Soybean	cytosol	13.69	22.96
KRH13469	Soybean	cytosol	23.18	22.88
KRG98866	Soybean	cytosol	22.52	22.67
KRH46097	Soybean	cytosol	11.26	22.57
KRG98867	Soybean	endoplasmic reticulum	22.52	22.52
KRH46095	Soybean	plastid	23.4	22.27
KRH30196	Soybean	cytosol	22.96	21.62
KRH30198	Soybean	cytosol	22.96	21.62
KRG98868	Soybean	cytosol	20.31	21.2
KRH46098	Soybean	cytosol	21.19	21.05
TraesCS2A01G040600.1	Wheat	cytosol	18.32	18.82

Protein Annotations

EnsemblPlants:TraesCS6A01G375300.1	EnsemblPlantsGene:TraesCS6A01G375300	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31642	PANTHER:PTHR31642:SF44
PFAM:PF02458	SEG:seg	MapMan:50.2.3	:	:	:

Description

No Description!

Coordinates

chr6A:+:597788413..597789774

Molecular Weight (calculated)

48824.4 Da

IEP (calculated)

7.543

GRAVY (calculated)

-0.047

Length

453 amino acids

Sequence
(BLAST)

001: MRATFFLACR MKITVQSSKS IKPDYGGHRP VAPPFTTNVV PLSVFDKANL DTQVSVIYAF HPPAPPNGVL EAGLARALVE YREFAGRLAR DADGSRRAIL
101: LNDAGARFVE ATAGVALGSV MPLRPTRAAL SLHPSGGDEL MLVQATRFAC GSLVVGLTVH HTVADGRGFC NFILAWGQAT RGAPVDPAPV HDRTSFFPPR
201: SPPKIEHEHR RAEFKPYDAR KDDDAGGGGG EEEEVVVERV HFSAECIAKL KAQASSAGAR HSTSTVQCVL AHLWRCVTRA RGLDGGDATA LLIGVDGRRR
301: MRPPVPDGYT GNVVLWARPT ATARELVDMP LRHAAELIGR AVARVDDTYY MSFIDFACSG AVEEERLVPT ADAADMVLSP NVEVNSWVRL PFYDLDLGGG
401: RPFLFMPSYV PVEGVAFLVA SSAGSGSVDA YVSLFRRDMD AFRNCCTSGL SKL

Best Arabidopsis Sequence Match ( AT2G19070.1 )
(BLAST)

001: MAPITFRKSY TIVPAEPTWS GRFPLAEWDQ VGTITHIPTL YFYDKPSESF QGNVVEILKT SLSRVLVHFY PMAGRLRWLP RGRFELNCNA EGVEFIEAES
101: EGKLSDFKDF SPTPEFENLM PQVNYKNPIE TIPLFLAQVT KFKCGGISLS VNVSHAIVDG QSALHLISEW GRLARGEPLE TVPFLDRKIL WAGEPLPPFV
201: SPPKFDHKEF DQPPFLIGET DNVEERKKKT IVVMLPLSTS QLQKLRSKAN GSKHSDPAKG FTRYETVTGH VWRCACKARG HSPEQPTALG ICIDTRSRME
301: PPLPRGYFGN ATLDVVAAST SGELISNELG FAASLISKAI KNVTNEYVMI GIEYLKNQKD LKKFQDLHAL GSTEGPFYGN PNLGVVSWLT LPMYGLDFGW
401: GKEFYTGPGT HDFDGDSLIL PDQNEDGSVI LATCLQVAHM EAFKKHFYED I

Arabidopsis Description

SHTSpermidine hydroxycinnamoyl transferase [Source:UniProtKB/Swiss-Prot;Acc:O64470]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.