CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46098	Soybean	cytosol	72.85	72.37
KRG98866	Soybean	cytosol	69.09	69.56
KRG98868	Soybean	cytosol	64.24	67.05
KRH13469	Soybean	cytosol	64.9	64.05
KRH32581	Soybean	cytosol	59.38	62.56
KRH32575	Soybean	cytosol	61.81	62.5
KRH30196	Soybean	cytosol	64.9	61.12
KRH30198	Soybean	cytosol	64.9	61.12
KRH46099	Soybean	cytosol, plastid	55.19	55.31
KRG98873	Soybean	mitochondrion	54.97	53.9
KRH46094	Soybean	plastid	52.98	51.61
KRG98872	Soybean	cytosol, peroxisome, plastid	52.76	51.29
KRG98999	Soybean	mitochondrion, peroxisome, plastid	53.86	50.83
KRH46097	Soybean	cytosol	25.17	50.44
KRH46095	Soybean	plastid	52.32	49.79
KRG89744	Soybean	cytosol	49.45	48.28
KRH70082	Soybean	cytosol	24.72	41.48
KRH08423	Soybean	cytosol	40.4	40.94
KRH06686	Soybean	peroxisome	38.63	37.63
KRH02826	Soybean	cytosol	37.31	37.14
KRH06685	Soybean	plastid	37.09	36.6
KRH02825	Soybean	cytosol	36.42	35.87
KRH44584	Soybean	cytosol	31.35	33.1
KRH23680	Soybean	cytosol, nucleus	31.13	32.12
KRH09635	Soybean	cytosol	25.83	31.28
KRH47315	Soybean	endoplasmic reticulum	31.35	30.54
KRH53324	Soybean	cytosol	16.11	30.17
TraesCS5A01G337500.1	Wheat	cytosol	26.49	27.65
TraesCS5D01G342100.1	Wheat	cytosol	26.27	27.42
TraesCS5A01G304000.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	25.83	27.02
TraesCS5D01G342300.1	Wheat	cytosol	25.83	26.96
HORVU4Hr1G077720.7	Barley	cytosol, extracellular, peroxisome	25.61	26.91
HORVU5Hr1G084820.2	Barley	cytosol	25.61	26.73
HORVU5Hr1G077720.1	Barley	mitochondrion	25.61	26.61
HORVU5Hr1G079580.1	Barley	mitochondrion	25.61	26.61
HORVU5Hr1G084810.1	Barley	cytosol	25.17	26.57
TraesCS5A01G337700.1	Wheat	cytosol	25.39	26.5
TraesCS5A01G337900.1	Wheat	cytosol	25.39	26.5
TraesCS5D01G342400.1	Wheat	cytosol, golgi, plastid	25.39	26.5
TraesCS5D01G310800.1	Wheat	cytosol	25.39	26.38
TraesCSU01G244500.1	Wheat	cytosol	10.6	26.37
Os09t0543900-01	Rice	cytosol	25.39	26.32
TraesCS5A01G337800.1	Wheat	cytosol	25.17	26.27
Zm00001d021324_P001	Maize	cytosol	25.61	26.13
Zm00001d006263_P001	Maize	cytosol	25.61	26.07
Zm00001d021329_P001	Maize	cytosol	25.83	26.06
TraesCS4A01G003300.1	Wheat	cytosol, extracellular, peroxisome	24.72	25.99
TraesCS5A01G338700.1	Wheat	cytosol	25.17	25.97
TraesCS4A01G002900.1	Wheat	cytosol, extracellular, peroxisome	17.44	25.82
TraesCS6B01G030200.1	Wheat	cytosol	7.51	25.76
TraesCS4D01G300400.1	Wheat	cytosol, extracellular, peroxisome	24.5	25.75
Os10t0380100-01	Rice	mitochondrion	17.0	25.58
TraesCS5D01G342800.1	Wheat	cytosol	24.72	25.51
OQU89853	Sorghum	cytosol	24.94	25.51
TraesCS4D01G300800.1	Wheat	cytosol, extracellular, peroxisome	24.72	25.45
TraesCS5A01G338600.1	Wheat	cytosol	24.72	25.4
TraesCS5D01G342700.1	Wheat	cytosol	24.72	25.4
TraesCS4D01G359800.1	Wheat	cytosol	24.06	25.29
GSMUA_Achr8P03170_001	Banana	cytosol	20.97	25.27
TraesCS2D01G490400.1	Wheat	cytosol	24.5	25.17
Zm00001d022592_P001	Maize	cytosol	24.72	25.17
TraesCS5A01G549100.1	Wheat	cytosol	14.35	25.1
HORVU4Hr1G004050.1	Barley	cytosol	24.5	25.0
HORVU2Hr1G109430.2	Barley	cytosol	24.06	24.89
TraesCS4D01G024500.1	Wheat	cytosol	24.5	24.83
Os04t0664500-01	Rice	cytosol	6.84	24.8
HORVU5Hr1G084980.1	Barley	cytosol	25.39	24.78
Os04t0664600-00	Rice	cytosol	24.5	24.72
TraesCS2A01G490000.1	Wheat	cytosol	24.06	24.72
GSMUA_Achr8P03210_001	Banana	cytosol	19.21	24.72
OQU91195	Sorghum	cytosol	24.94	24.67
HORVU2Hr1G125370.1	Barley	cytosol	22.96	24.36
GSMUA_Achr8P15170_001	Banana	cytosol	20.75	24.35
Zm00001d033521_P001	Maize	cytosol	24.28	24.23
GSMUA_Achr8P03200_001	Banana	cytosol	18.32	24.06
TraesCS4A01G003400.1	Wheat	cytosol	22.52	24.06
TraesCS2D01G016600.1	Wheat	cytosol	24.72	23.98
TraesCS1A01G088300.1	Wheat	cytosol	23.18	23.97
GSMUA_Achr8P03180_001	Banana	plastid	21.63	23.96
GSMUA_Achr8P03190_001	Banana	cytosol	18.32	23.92
Os09t0544000-01	Rice	cytosol	23.84	23.89
HORVU2Hr1G125270.1	Barley	peroxisome	23.18	23.86
Os10t0379100-01	Rice	cytosol	22.96	23.85
HORVU2Hr1G109590.1	Barley	cytosol	17.0	23.84
TraesCS2D01G490900.1	Wheat	cytosol	23.18	23.81
TraesCS1D01G089900.1	Wheat	cytosol	22.96	23.74
Zm00001d006260_P001	Maize	cytosol	21.19	23.65
TraesCS6D01G359800.1	Wheat	peroxisome	22.96	23.64
TraesCS2D01G491100.1	Wheat	cytosol	22.96	23.58
Zm00001d048870_P001	Maize	peroxisome	23.62	23.52
TraesCS1A01G088400.1	Wheat	cytosol	22.74	23.52
TraesCS2D01G568200.1	Wheat	mitochondrion	22.3	23.49
Os03t0185700-01	Rice	cytosol, peroxisome, plasma membrane	23.62	23.46
TraesCS4A01G285200.1	Wheat	cytosol	24.06	23.44
TraesCS1D01G089600.1	Wheat	cytosol	22.52	23.29
TraesCS4A01G287500.1	Wheat	cytosol	23.84	23.23
TraesCS7A01G023200.1	Wheat	plastid	14.57	23.16
TraesCS2A01G570600.1	Wheat	cytosol	22.3	23.01
TraesCS7A01G148300.1	Wheat	peroxisome	22.52	22.92
HORVU4Hr1G077790.1	Barley	endoplasmic reticulum, extracellular, golgi, mitochondrion, peroxisome, plasma membrane, vacuole	22.52	22.82
TraesCS2D01G582000.1	Wheat	cytosol	22.08	22.73
HORVU6Hr1G088480.1	Barley	extracellular, plasma membrane	23.62	22.72
EES10710	Sorghum	cytosol	22.96	22.71
Zm00001d030542_P001	Maize	plastid	22.08	22.68
TraesCS2D01G581500.1	Wheat	cytosol	21.85	22.55
TraesCS6A01G375300.1	Wheat	mitochondrion	22.52	22.52
Zm00001d007606_P001	Maize	peroxisome	23.18	22.48
HORVU6Hr1G088530.1	Barley	cytosol	8.17	22.42
HORVU1Hr1G019380.2	Barley	cytosol, mitochondrion, plasma membrane	22.96	22.41
Zm00001d048871_P001	Maize	peroxisome	22.96	22.41
TraesCS4A01G003100.1	Wheat	peroxisome	22.3	22.39
HORVU4Hr1G077780.1	Barley	peroxisome	22.52	22.37
Zm00001d027946_P001	Maize	cytosol	21.85	22.35
Zm00001d027948_P001	Maize	cytosol	21.85	22.35
Zm00001d003856_P001	Maize	cytosol	22.08	22.32
TraesCS3D01G545300.1	Wheat	cytosol	22.08	22.17
Zm00001d048872_P001	Maize	cytosol	22.52	22.08
HORVU6Hr1G073010.3	Barley	cytosol	21.41	21.95
OQU83825	Sorghum	peroxisome, plastid	21.41	21.9
GSMUA_Achr4P00280_001	Banana	cytosol, endoplasmic reticulum, peroxisome	17.44	21.88
HORVU7Hr1G030410.3	Barley	peroxisome	22.3	21.86
TraesCS4A01G287700.1	Wheat	mitochondrion	7.51	21.79
TraesCSU01G241400.1	Wheat	mitochondrion	7.51	21.79
TraesCS5D01G154500.1	Wheat	plastid	21.63	21.78
Os12t0134700-01	Rice	cytosol	21.41	21.75
HORVU2Hr1G109470.1	Barley	cytosol	9.49	21.72
EER88164	Sorghum	cytosol	16.56	21.61
TraesCSU01G038200.1	Wheat	peroxisome	21.41	21.6
Os11t0642400-01	Rice	peroxisome	21.19	21.57
TraesCS4D01G300500.1	Wheat	peroxisome	21.41	21.51
Os11t0643100-01	Rice	peroxisome	21.19	21.43
TraesCS2A01G490700.1	Wheat	plastid	23.62	21.36
TraesCS5A01G137500.1	Wheat	plastid	21.19	21.33
TraesCS6A01G292100.1	Wheat	cytosol	20.75	21.22
GSMUA_Achr11P...	Banana	cytosol	19.43	21.2
HORVU5Hr1G044390.1	Barley	cytosol, peroxisome, plastid	20.75	21.03
EES09214	Sorghum	cytosol, peroxisome, plastid	20.97	20.97
Zm00001d052449_P001	Maize	cytosol, peroxisome, plastid	20.97	20.83
TraesCS6D01G273300.1	Wheat	cytosol	19.87	20.32
HORVU3Hr1G027720.1	Barley	cytosol	5.52	20.0
HORVU2Hr1G002500.2	Barley	cytosol	23.4	18.89
Os05t0116800-00	Rice	cytosol, plastid, vacuole	16.11	17.98
Zm00001d030540_P001	Maize	plastid	9.05	15.02
HORVU2Hr1G124070.1	Barley	cytosol	7.06	10.67

Protein Annotations

EMBL:ACUP02010928	EnsemblPlants:KRG98867	EnsemblPlantsGene:GLYMA_18G103500	EntrezGene:100803418	Gene3D:3.30.559.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase
PANTHER:PTHR31642	PANTHER:PTHR31642:SF57	PFAM:PF02458	ProteinID:KRG98867	ProteinID:KRG98867.1	SEG:seg
UniParc:UPI000233E2AA	UniProt:I1N0U1	MapMan:50.2.3	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:11234541..11236613

Molecular Weight (calculated)

50852.8 Da

IEP (calculated)

8.521

GRAVY (calculated)

-0.345

Length

453 amino acids

Sequence
(BLAST)

001: MVTIVGSYNV TPNQPTPKDP SWLSDSDQIG VLGHVAIVYI YEANPNSNTI ERLRNSLSKL LVYYYPFAGR FSLTKSGRIE VDCNAKGVTL IEAKTSHTLD
101: DYGDFSPSKL TEELVPDIDY TPPIEEIPLL LLQFTRFHCG KGLAIGVVIS HPMTDATGLT QFMNRWAKLA RGEELNPNEI PFLDRTLLKF PHQPSSQRVD
201: QPELKPVLQL EQKKNARWSG ALLKLKSSQV ERLKKKANDE PSREGARPYS RFESIAAHIW RCASKARAES GENSNSNHPT IVRFSVNFRN RLLTPPIPEN
301: YLGNALARTM TPKCYEGDII SKPLGYAAQK IREAVNAVTG EYVKSQLSVG LGQEQVDHIR AFFMGQGHGT KPAYARDHNI LLTSWMNMPV YEADFGWGKP
401: MQFTLAHVFQ QVDRVGIFPS PDGDGVVVYL NFETAQLQLL KKLFYADMYV SSL

Best Arabidopsis Sequence Match ( AT2G19070.1 )
(BLAST)

001: MAPITFRKSY TIVPAEPTWS GRFPLAEWDQ VGTITHIPTL YFYDKPSESF QGNVVEILKT SLSRVLVHFY PMAGRLRWLP RGRFELNCNA EGVEFIEAES
101: EGKLSDFKDF SPTPEFENLM PQVNYKNPIE TIPLFLAQVT KFKCGGISLS VNVSHAIVDG QSALHLISEW GRLARGEPLE TVPFLDRKIL WAGEPLPPFV
201: SPPKFDHKEF DQPPFLIGET DNVEERKKKT IVVMLPLSTS QLQKLRSKAN GSKHSDPAKG FTRYETVTGH VWRCACKARG HSPEQPTALG ICIDTRSRME
301: PPLPRGYFGN ATLDVVAAST SGELISNELG FAASLISKAI KNVTNEYVMI GIEYLKNQKD LKKFQDLHAL GSTEGPFYGN PNLGVVSWLT LPMYGLDFGW
401: GKEFYTGPGT HDFDGDSLIL PDQNEDGSVI LATCLQVAHM EAFKKHFYED I

Arabidopsis Description

SHTSpermidine hydroxycinnamoyl transferase [Source:UniProtKB/Swiss-Prot;Acc:O64470]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.