CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH09635	Soybean	cytosol	72.44	85.03
KRH44584	Soybean	cytosol	82.92	84.85
KRH47315	Soybean	endoplasmic reticulum	84.74	80.0
VIT_09s0018g01190.t01	Wine grape	cytosol	75.4	77.16
Solyc03g117600.2.1	Tomato	cytosol, extracellular	75.17	75.86
Bra036480.1-P	Field mustard	cytosol, peroxisome, plastid	73.12	75.71
PGSC0003DMT400036695	Potato	cytosol	73.35	75.59
CDY31956	Canola	cytosol	74.26	75.29
CDY05770	Canola	cytosol	74.03	75.06
AT5G48930.1	Thale cress	cytosol	74.03	75.06
Bra033526.1-P	Field mustard	mitochondrion	66.29	67.99
CDY22880	Canola	mitochondrion	66.29	67.99
CDY44162	Canola	plastid	65.83	67.52
GSMUA_Achr5P04550_001	Banana	cytosol	64.01	67.06
GSMUA_Achr10P...	Banana	mitochondrion	66.51	66.36
GSMUA_Achr4P01990_001	Banana	mitochondrion	64.46	64.91
TraesCS2D01G354300.1	Wheat	mitochondrion	63.33	63.47
EES11073	Sorghum	mitochondrion	63.33	63.04
TraesCS2B01G374600.1	Wheat	mitochondrion	62.87	63.01
TraesCS2A01G354500.1	Wheat	mitochondrion	63.1	62.67
Os04t0500700-02	Rice	mitochondrion	63.1	62.67
Zm00001d017186_P001	Maize	extracellular	63.1	62.11
Os02t0611800-01	Rice	plasma membrane	61.96	61.54
TraesCS6B01G249400.1	Wheat	cytosol, golgi	61.5	61.22
EES05411	Sorghum	cytosol	62.41	61.16
TraesCS6D01G203000.1	Wheat	cytosol	61.5	61.09
HORVU6Hr1G056230.2	Barley	cytosol	61.28	61.0
TraesCS6A01G232200.1	Wheat	cytosol	61.28	60.86
Zm00001d003129_P001	Maize	mitochondrion	20.27	60.54
HORVU1Hr1G081430.3	Barley	cytosol, peroxisome, plastid	49.89	57.48
TraesCS3B01G002000.1	Wheat	mitochondrion	56.49	56.88
TraesCS1D01G021600.1	Wheat	mitochondrion	56.95	56.69
TraesCS3D01G525000.1	Wheat	mitochondrion	56.95	56.56
TraesCS3A01G517500.1	Wheat	mitochondrion	57.4	56.5
TraesCS1B01G005300.1	Wheat	mitochondrion	45.56	50.25
HORVU2Hr1G086380.1	Barley	cytosol, nucleus, plastid	62.64	47.25
KRH02826	Soybean	cytosol	41.23	39.78
KRH02825	Soybean	cytosol	39.86	38.04
KRH46099	Soybean	cytosol, plastid	37.81	36.73
KRH46097	Soybean	cytosol	18.45	35.84
KRG98872	Soybean	cytosol, peroxisome, plastid	37.81	35.62
KRH08423	Soybean	cytosol	35.99	35.35
KRG98873	Soybean	mitochondrion	36.67	34.85
KRH46094	Soybean	plastid	36.9	34.84
KRG89744	Soybean	cytosol	36.67	34.7
KRG98999	Soybean	mitochondrion, peroxisome, plastid	37.81	34.58
KRH46095	Soybean	plastid	37.36	34.45
KRH32581	Soybean	cytosol	33.49	34.19
KRH32575	Soybean	cytosol	34.85	34.15
KRH70082	Soybean	cytosol	20.27	32.96
KRH06686	Soybean	peroxisome	33.94	32.04
KRG98866	Soybean	cytosol	32.8	32.0
KRH46098	Soybean	cytosol	32.8	31.58
KRG98867	Soybean	endoplasmic reticulum	32.12	31.13
KRH13469	Soybean	cytosol	32.35	30.94
KRH06685	Soybean	plastid	31.66	30.28
KRG98868	Soybean	cytosol	29.84	30.18
KRH30196	Soybean	cytosol	32.12	29.31
KRH30198	Soybean	cytosol	32.12	29.31
KRH53324	Soybean	cytosol	15.49	28.1

Protein Annotations

EMBL:ACUP02008482	EnsemblPlants:KRH23680	EnsemblPlantsGene:GLYMA_13G371000	EntrezGene:100801923	Gene3D:3.30.559.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase
PFAM:PF02458	ProteinID:KRH23680	ProteinID:KRH23680.1	SEG:seg	UniParc:UPI00018C701C	UniProt:A0A0R4J520
MapMan:21.6.1.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:45626397..45631965

Molecular Weight (calculated)

48787.4 Da

IEP (calculated)

6.742

GRAVY (calculated)

-0.145

Length

439 amino acids

Sequence
(BLAST)

001: MLINVKQSTM VRPAEETPRR ALWNSNVDLV VPNFHTPSVY FYRPNGVSNF FDAKVMKEAL SKVLVPFYPM AARLRRDDDG RVEIYCDAQG VLFVEAETTA
101: AIEDFGDFSP TLELRQLIPS VDYSAGIHSY PLLVLQVTYF KCGGVSLGVG MQHHVADGAS GLHFINAWSD VARGLDISLP PFIDRTLLRA RDPPLPVFDH
201: IEYKPPPATK KTTPLQPSKP LGSDSTAVAV STFKLTRDQL STLKGKSRED GNTISYSSYE MLAGHVWRSV CKARALPDDQ ETKLYIATDG RARLQPPLPH
301: GYFGNVIFTT TRIAVAGDLM SKPTWYAASR IHDALIRMDN EYLRSALDYL ELQPDLKSLV RGAHTFRCPN LGITSWARLP IHDADFGWGR PIFMGPGGIA
401: YEGLSFIIPS STNDGSLSLA IALPPEQMKV FQELFYDDI

Best Arabidopsis Sequence Match ( AT5G57840.1 )
(BLAST)

001: MKIRVKQATI VKPAEETPTH NLWLSNLDLI QVRLHMGTLY FYKPCSSSDR PNTQSLIEAL SKVLVFFYPA AGRLQKNTNG RLEVQCNGEG VLFVEAESDS
101: TVQDIGLLTQ SLDLSQLVPT VDYAGDISSY PLLLFQVTYF KCGTICVGSS IHHTFGEATS LGYIMEAWSL TARGLLVKLT PFLDRTVLHA RNPPSSVFPH
201: TEYQSPPFHN HPMKSLAYRS NPESDSAIAT LKLTRLQLKA LKARAEIADS KFSTYEVLVA HTWRCASFAN EDLSEEHSTR LHIIIDGRPR LQPKLPQGYI
301: GNTLFHARPV SPLGAFHRES FSETVERVHR EIRKMDNEYL RSAIDYLERH PDLDQLVPGE GNTIFSCAAN FCIVSLIKQT AYEMDFGWGK AYYKRASHLN
401: EGKGFVTGNP DEEGSMMLTM CLKKTQLSKF RKLFYEFLNV SAL

Arabidopsis Description

AT5g57840/MTI20_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.