Factsheet for PGSC0003DMT400029079

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029209

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57840.1	PGSC0003DMT400029209	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g005760.2.1	Tomato	cytosol	91.39	76.51
PGSC0003DMT400036695	Potato	cytosol	57.22	48.36
VIT_11s0037g00440.t01	Wine grape	cytosol	53.89	44.8
Bra006797.1-P	Field mustard	cytosol	45.0	36.57
CDX88644	Canola	cytosol	44.72	36.26
CDX88645	Canola	cytosol, golgi, nucleus	44.72	36.18
Bra006796.1-P	Field mustard	cytosol, golgi, nucleus	44.72	35.94
AT5G57840.1	Thale cress	cytosol	44.17	35.89
PGSC0003DMT400087784	Potato	cytosol	35.56	28.38
PGSC0003DMT400001145	Potato	cytosol	34.17	27.89
PGSC0003DMT400018441	Potato	cytosol	33.61	27.19
PGSC0003DMT400048126	Potato	cytosol	29.44	23.5
PGSC0003DMT400048130	Potato	cytoskeleton, cytosol, peroxisome	32.5	20.56
CDY11845	Canola	cytosol	40.28	15.25

Protein Annotations

Gene3D:3.30.559.10	MapMan:50.2.3	ProteinID:ABA46756	ProteinID:ABA46756.1	ProteinID:ADF50082	ProteinID:ADF50082.1
InterPro:CAT-like_dom_sf	EMBL:DQ200363	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740	GO:GO:0016747
EMBL:HM010923	InterPro:IPR023213	UniProt:M1AS77	PFAM:PF02458	EnsemblPlantsGene:PGSC0003DMG400011189	PGSC:PGSC0003DMG400011189
EnsemblPlants:PGSC0003DMT400029079	PANTHER:PTHR31642	PANTHER:PTHR31642:SF66	SUPFAM:SSF52777	InterPro:Transferase	UniParc:UPI0002959E1C

Description

HQT [Source:PGSC_GENE;Acc:PGSC0003DMG400011189]

Coordinates

chr7:-:1001854..1006278

Molecular Weight (calculated)

39859.6 Da

IEP (calculated)

6.129

GRAVY (calculated)

-0.214

Length

360 amino acids

Sequence
(BLAST)

001: MAGRLARDEQ GRIEVNCNGE GVLFVEAESD SCIDDFGDFT PCLELKKLIP SVETSGDIST FPLAIFQVTR FKCGGIALGG GVFHTLSDGL SSLHFINTWS
101: DIARGLSVAV PPFIDRTLLH ARDPPTSSFE HVEYHPPPTL ISSKKGESTG PKSSTTAMLK FSSEQVGLLK SKSENEGSTY EILAAHIWRC TSKARGLADD
201: QLTKLHVATD GRSRLCPPLP PGYLGNVVFT ATPIAKSCEL QSEPLRNSVK RIHNELIKMD DNYLRSALDY LELQPDLSTL IRGPTYFTSP NLNINSWTRL
301: PVHECDFGWG RPIHMGPACI LYEGTIYIIP SPNTKDRNLR LAVCLDPDHM PLFEKYLYEF

Best Arabidopsis Sequence Match ( AT5G48930.1 )
(BLAST)

001: MKINIRDSTM VRPATETPIT NLWNSNVDLV IPRFHTPSVY FYRPTGASNF FDPQVMKEAL SKALVPFYPM AGRLKRDDDG RIEIDCNGAG VLFVVADTPS
101: VIDDFGDFAP TLNLRQLIPE VDHSAGIHSF PLLVLQVTFF KCGGASLGVG MQHHAADGFS GLHFINTWSD MARGLDLTIP PFIDRTLLRA RDPPQPAFHH
201: VEYQPAPSMK IPLDPSKSGP ENTTVSIFKL TRDQLVALKA KSKEDGNTVS YSSYEMLAGH VWRSVGKARG LPNDQETKLY IATDGRSRLR PQLPPGYFGN
301: VIFTATPLAV AGDLLSKPTW YAAGQIHDFL VRMDDNYLRS ALDYLEMQPD LSALVRGAHT YKCPNLGITS WVRLPIYDAD FGWGRPIFMG PGGIPYEGLS
401: FVLPSPTNDG SLSVAIALQS EHMKLFEKFL FEI

Arabidopsis Description

HSTShikimate O-hydroxycinnamoyltransferase [Source:UniProtKB/Swiss-Prot;Acc:Q9FI78]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.