Factsheet for Bra006796.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 2
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002826.1-P
Bra028938.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57840.1	Bra002826.1-P	AT5G56290.1	21798944
AT5G57840.1	Bra028938.1-P	AT5G56290.1	21798944
AT5G57840.1	Bra035613.1-P	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88645	Canola	cytosol, golgi, nucleus	97.32	97.98
Bra006797.1-P	Field mustard	cytosol	85.04	86.0
AT5G57840.1	Thale cress	cytosol	77.01	77.88
Solyc07g005760.2.1	Tomato	cytosol	43.53	45.35
PGSC0003DMT400029079	Potato	cytosol	35.94	44.72
Bra033526.1-P	Field mustard	mitochondrion	42.19	44.16
VIT_11s0037g00440.t01	Wine grape	cytosol	42.41	43.88
Bra036480.1-P	Field mustard	cytosol, peroxisome, plastid	41.52	43.87
Bra024450.1-P	Field mustard	cytosol	26.79	31.58
Bra038561.1-P	Field mustard	cytosol	31.03	30.82

Protein Annotations

EnsemblPlants:Bra006796.1	EnsemblPlants:Bra006796.1-P	EnsemblPlantsGene:Bra006796	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31642
PANTHER:PTHR31642:SF66	PFAM:PF02458	UniParc:UPI0002540389	UniProt:M4CRF5	MapMan:50.2.3	:

Description

AT5G57840 (E=4e-201) | transferase family protein

Coordinates

chrA03:+:5071860..5073568

Molecular Weight (calculated)

50351.9 Da

IEP (calculated)

7.730

GRAVY (calculated)

-0.088

Length

448 amino acids

Sequence
(BLAST)

001: MSHMKIRVKQ ASIVKPAEET PIHSLWLSNL DLIQVRFHMG ILYFYNPCSS SSLPNTPSLI DALRKVLVLF YPAAGRLQKD KNGRLEVLCN GEGVLLVEAE
101: TDSTIQDVGL LTQALDLSEL VPTLAYSGDI SSLPLLLFQV TYFKCGAICI GTLIHHTFGD AGSLTCFMEA WSRTARGLPV TPTPFFDRTI LRARDPPSPV
201: FPHTEYQPPP FYNPPVTSLA YKSNPDSDSG VVSLKLTRLQ LRALRAKTEV ANHKSISTYE LLVAHIWRCA CFANEDSREE HLTRLHIILD GRSRLEPKLP
301: QGYIGNALFH ARPISLLGDL LREPFSRTVE RVHGEIRKMD NEYLRSAIDC LERHPDLDQL VPGEGNPIFS CAANFCIVSL RKDTSAYELD FGWGKPFFKR
401: TSHLNEGKGF VGMSLDEEGS FIVFMCLKKT QLSKFRKLFY EFLNVSAL

Best Arabidopsis Sequence Match ( AT5G57840.1 )
(BLAST)

001: MKIRVKQATI VKPAEETPTH NLWLSNLDLI QVRLHMGTLY FYKPCSSSDR PNTQSLIEAL SKVLVFFYPA AGRLQKNTNG RLEVQCNGEG VLFVEAESDS
101: TVQDIGLLTQ SLDLSQLVPT VDYAGDISSY PLLLFQVTYF KCGTICVGSS IHHTFGEATS LGYIMEAWSL TARGLLVKLT PFLDRTVLHA RNPPSSVFPH
201: TEYQSPPFHN HPMKSLAYRS NPESDSAIAT LKLTRLQLKA LKARAEIADS KFSTYEVLVA HTWRCASFAN EDLSEEHSTR LHIIIDGRPR LQPKLPQGYI
301: GNTLFHARPV SPLGAFHRES FSETVERVHR EIRKMDNEYL RSAIDYLERH PDLDQLVPGE GNTIFSCAAN FCIVSLIKQT AYEMDFGWGK AYYKRASHLN
401: EGKGFVTGNP DEEGSMMLTM CLKKTQLSKF RKLFYEFLNV SAL

Arabidopsis Description

AT5g57840/MTI20_9 [Source:UniProtKB/TrEMBL;Acc:Q9FJN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.