CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79533
CDX80638
CDX84682
CDX86151
CDX88648
CDY02778
CDY11841
CDY17182
CDY19499
CDY28975
CDY32739
CDY32958
CDY36555
CDY39641
CDY40577
CDY43605
CDY51271
CDY57462

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	CDX79533	AT2G33520.1	21798944
AT5G56290.1	CDX84682	AT2G33520.1	21798944
AT5G56290.1	CDY17182	AT2G33520.1	21798944
AT5G56290.1	CDY19499	AT2G33520.1	21798944
AT5G56290.1	CDY28975	AT3G01910.1	21798944
AT5G56290.1	CDY36555	AT3G01910.1	21798944
AT5G56290.1	CDY39641	AT3G01910.1	21798944
AT5G56290.1	CDY40577	AT3G01910.1	21798944
AT5G56290.1	CDX80638	AT5G27600.1	16256065
AT5G56290.1	CDX86151	AT5G27600.1	16256065
AT5G56290.1	CDY32958	AT5G43280.1	24879895
AT5G56290.1	CDY43605	AT5G43280.1	24879895
AT5G56290.1	CDX88648	AT5G57910.1	21798944
AT5G56290.1	CDY02778	AT5G57910.1	21798944
AT5G56290.1	CDY11841	AT5G57910.1	21798944
AT5G56290.1	CDY32739	AT5G57910.1	21798944
AT5G56290.1	CDY51271	AT5G57910.1	21798944
AT5G56290.1	CDY57462	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49390	Canola	plastid	73.14	29.7
CDY11941	Canola	plastid	73.5	28.49
AT5G56290.1	Thale cress	plastid	72.08	28.02
CDY36789	Canola	plastid	74.2	27.81
CDY67858	Canola	cytosol	21.55	27.6
CDY69423	Canola	plastid	36.04	23.5
GSMUA_Achr7P20310_001	Banana	plastid	51.94	19.39
Os08t0500100-02	Rice	cytosol	48.06	18.48
HORVU7Hr1G049220.10	Barley	plastid	48.06	18.18
TraesCS7A01G241500.5	Wheat	cytosol, plastid	48.06	18.18
TraesCS7B01G137000.2	Wheat	cytosol, plastid	48.06	18.18
TraesCS7D01G240500.3	Wheat	cytosol, plastid	48.06	18.16
EES15431	Sorghum	plastid	46.64	17.98
Zm00001d031327_P009	Maize	plastid	47.0	17.97
Zm00001d052851_P002	Maize	plastid	48.06	17.69
TraesCS6A01G105000.1	Wheat	plastid	43.46	17.35
CDY66435	Canola	cytosol	2.47	6.03
CDY20736	Canola	extracellular	0.35	1.56

Protein Annotations

EnsemblPlants:CDY66434	EnsemblPlantsGene:GSBRNA2T00053617001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:PTS1R_family	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10130	ProteinID:CDY66434	ProteinID:CDY66434.1
SEG:seg	SUPFAM:SSF48452	UniParc:UPI0004EDBADC	UniProt:A0A078JIA0	MapMan:23.4.1.1.1	:

Description

BnaC02g12350DBnaC02g12350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIA0]

Coordinates

chrLK035262:+:1507..3942

Molecular Weight (calculated)

31388.7 Da

IEP (calculated)

4.266

GRAVY (calculated)

-0.417

Length

283 amino acids

Sequence
(BLAST)

001: MSNQMRSMDM QHLAAMEQTR KLAHTLSQDG NPIFQNEMKP GPASGEWATE YEQQYLGPPS WANQFANEQG TDSMLVQIDL LLCLSRIAII SQLKLLLSHG
101: PEQWADEFAS GKGQQESAED KWVNEFSKLN VDDWVDEFAE GPVGGSSADA WGNAYDEFLT ERNSEKHASG VYVFSDMNPY VGHPEPMKEG LELFRKGLLS
201: ESALALEAEA IAAMMRAQEA DPSNLEVLLA LGVSHTSELE QATALKYLYG WLRSHPKYGT IAPPELADSL YHADIARLFT EAS

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.