Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY02778 | Canola | nucleus | 91.19 | 90.26 |
| Bra020404.1-P | Field mustard | nucleus | 91.71 | 86.76 |
| CDX88648 | Canola | nucleus | 72.54 | 66.04 |
| CDY51271 | Canola | nucleus | 66.32 | 65.98 |
| AT5G57910.1 | Thale cress | nucleus | 70.47 | 65.7 |
| CDY11841 | Canola | nucleus | 71.5 | 64.79 |
| CDY57462 | Canola | nucleus | 66.84 | 64.18 |
| CDX68674 | Canola | nucleus | 38.86 | 36.06 |
| CDY28197 | Canola | nucleus | 38.34 | 35.75 |
| CDY39225 | Canola | nucleus | 35.75 | 34.5 |
| KRH03036 | Soybean | nucleus | 41.97 | 31.52 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 37.31 | 30.51 |
| KRH72318 | Soybean | cytosol | 40.41 | 30.12 |
| Solyc12g009970.1.1 | Tomato | nucleus | 33.68 | 21.96 |
| Solyc07g005690.2.1 | Tomato | cytosol | 33.16 | 21.48 |
| PGSC0003DMT400028944 | Potato | cytosol | 32.12 | 20.67 |
| PGSC0003DMT400020258 | Potato | nucleus | 31.09 | 20.34 |
Protein Annotations
| EnsemblPlants:CDY32739 | EnsemblPlantsGene:GSBRNA2T00052792001 | ncoils:Coil | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | ProteinID:CDY32739 |
| ProteinID:CDY32739.1 | SEG:seg | UniParc:UPI0004EF0F1F | UniProt:A0A078H5K4 | MapMan:35.2 | : |
Description
BnaA02g08010DBnaA02g08010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5K4]
Coordinates
chrLK032298:+:420275..421749
Molecular Weight (calculated)
22619.8 Da
IEP (calculated)
10.503
GRAVY (calculated)
-1.250
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRAHGDFTP SNSNPFEDPK IRFRHHSLFQ DYQELHMDTE AMRKRLQTMQ ERKATLMAEV RFLRRRYRHL RQDQPVKKVR GRSNGGKKSK TQLVRVEVSP
101: NKTSEAETKH VSLPDLNHSG EAHHDETKTK KVPLFDLNQI SGEEEEEMNN SEERMRVEQR RMSSIEMLSC RNGGDGSHKR KSSWQDPVAA LRV
101: NKTSEAETKH VSLPDLNHSG EAHHDETKTK KVPLFDLNQI SGEEEEEMNN SEERMRVEQR RMSSIEMLSC RNGGDGSHKR KSSWQDPVAA LRV
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.