Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61791 | Canola | nucleus | 27.35 | 39.35 |
| CDX68825 | Canola | plastid | 91.93 | 27.22 |
| CDX75227 | Canola | plastid | 91.48 | 27.09 |
| AT4G32190.1 | Thale cress | plastid | 69.96 | 19.92 |
| KRH05183 | Soybean | plastid | 49.33 | 14.4 |
| VIT_04s0008g05610.t01 | Wine grape | plastid | 47.98 | 13.82 |
| KRH15859 | Soybean | endoplasmic reticulum, vacuole | 43.5 | 13.51 |
| PGSC0003DMT400010993 | Potato | plastid | 39.91 | 11.56 |
| Solyc08g022030.2.1 | Tomato | nucleus | 39.01 | 11.3 |
| HORVU6Hr1G036020.1 | Barley | plastid | 30.94 | 8.91 |
| Os02t0186400-01 | Rice | plastid | 30.49 | 8.91 |
| TraesCS6A01G180500.1 | Wheat | plastid | 30.49 | 8.8 |
| TraesCS6D01G164600.1 | Wheat | plastid | 29.6 | 8.54 |
| Zm00001d053726_P001 | Maize | plastid | 29.15 | 8.43 |
| EES06399 | Sorghum | plastid | 28.25 | 8.14 |
| CDX95298 | Canola | nucleus | 7.17 | 1.61 |
| CDY35289 | Canola | nucleus | 0.9 | 0.53 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 0.0 | 0.0 |
| CDY61790 | Canola | endoplasmic reticulum, extracellular | 0.0 | 0.0 |
| CDY02356 | Canola | cytosol | 0.0 | 0.0 |
| CDX81489 | Canola | nucleus | 0.0 | 0.0 |
| CDX81488 | Canola | cytosol, nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX81487 | EnsemblPlantsGene:GSBRNA2T00135102001 | ncoils:Coil | PANTHER:PTHR23160 | PANTHER:PTHR23160:SF11 | ProteinID:CDX81487 |
| ProteinID:CDX81487.1 | SEG:seg | UniParc:UPI0004EE70A4 | MapMan:35.2 | : | : |
Description
BnaC02g17910D
Coordinates
chrLK031825:-:232425..233144
Molecular Weight (calculated)
25334.4 Da
IEP (calculated)
4.171
GRAVY (calculated)
-0.435
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMANFHLNR IEDELGSSKM QASEAEMVVE RIAELTSRLI QDQMQQQPQE KQPYGDYGME NKQLVMELNF TIENLRLKEM EVLATQRALT LKDEEINVLM
101: GRLEAKEREV KKLKEETVHD GEDLKMLYAL AQERIEGRTM GDLAIEKLQL DAAQLEVEAA TSALQKLAEM STELLTQADM SMEVDSDIVV VPENENSSAD
201: CIAEVKSEVG RLWSLTERLL ENA
101: GRLEAKEREV KKLKEETVHD GEDLKMLYAL AQERIEGRTM GDLAIEKLQL DAAQLEVEAA TSALQKLAEM STELLTQADM SMEVDSDIVV VPENENSSAD
201: CIAEVKSEVG RLWSLTERLL ENA
001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL
Arabidopsis Description
Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.