Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27805 | Canola | nucleus | 75.65 | 74.11 |
| CDY32708 | Canola | nucleus | 12.18 | 62.67 |
| CDY43862 | Canola | nucleus | 62.44 | 60.1 |
| CDY32992 | Canola | nucleus | 63.21 | 56.22 |
| AT1G15720.1 | Thale cress | nucleus | 56.74 | 56.15 |
| CDY32710 | Canola | cytosol | 8.81 | 53.12 |
| Solyc06g082510.2.1 | Tomato | nucleus | 30.05 | 24.84 |
| KRH41741 | Soybean | nucleus | 8.29 | 24.62 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 30.05 | 24.22 |
| PGSC0003DMT400078128 | Potato | nucleus | 28.5 | 23.71 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 25.39 | 23.33 |
| KRH63009 | Soybean | nucleus | 25.39 | 22.37 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 20.98 | 22.25 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 23.83 | 22.06 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 23.58 | 21.82 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 23.32 | 21.63 |
| KRH30478 | Soybean | nucleus | 25.91 | 21.32 |
| OQU93426 | Sorghum | cytosol | 19.69 | 21.29 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 20.73 | 21.11 |
| KRH54884 | Soybean | nucleus | 26.94 | 21.1 |
| EER93019 | Sorghum | nucleus | 23.32 | 20.98 |
| Zm00001d045123_P001 | Maize | nucleus | 21.76 | 20.84 |
| KRG98140 | Soybean | nucleus | 25.13 | 20.73 |
| TraesCS2B01G094500.1 | Wheat | plastid | 20.21 | 20.63 |
| TraesCS2A01G079700.1 | Wheat | plastid | 19.95 | 20.42 |
| Zm00001d036356_P005 | Maize | nucleus | 22.8 | 20.23 |
| Zm00001d007141_P003 | Maize | nucleus | 22.54 | 19.82 |
| Os07t0695900-01 | Rice | nucleus | 19.17 | 19.27 |
| Os06t0181300-01 | Rice | nucleus | 14.77 | 17.01 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 12.18 | 15.16 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 10.62 | 14.7 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 25.13 | 14.48 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 24.87 | 14.33 |
| OQU91491 | Sorghum | nucleus | 18.13 | 11.9 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 17.88 | 11.54 |
Protein Annotations
| EnsemblPlants:CDY41924 | EnsemblPlantsGene:GSBRNA2T00073907001 | Gene3D:1.10.246.220 | GO:A0A078HX20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | PFAM:PF00249 | PFscan:PS51294 | ProteinID:CDY41924 | ProteinID:CDY41924.1 |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED28C | UniProt:A0A078HX20 | MapMan:15.5.2.2 | : |
Description
BnaC05g46800DBnaC05g46800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX20]
Coordinates
chrLK032510:-:199663..201321
Molecular Weight (calculated)
43979.9 Da
IEP (calculated)
7.019
GRAVY (calculated)
-0.796
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MGVMDKWVAE FFIRRKKNPR VSPTNLLSAL KFRDSADDCS NNLKKASVLR DISDSLIRGN VSEGTLDLLE TLEKLHQGSS VLTESHKSAY CWTAAECTVR
101: LMWPLSASEG LYGDAVERIW TKRIGVLKER GSGLVSEELL KWEADLRKAV EDDEVYKRIR ESNVRYSAVC FLNQLLEEQW AVLGSCSLES FAQRMLLKRR
201: KGADKGSRED PNAVDGDNRD VDGVECLEND EQHAAEGERT MGAQEQEHEP SLDKGDKMVA QELKYYLLEI QRQLQEPNNA NITPPQPSRV NSTRKSGQQQ
301: DSASESRVRP HLPTPEPLNV SPLKKKRANP AARRIKKFWT PEEEAVLREG VKEYGKSWKE IKNANPEVFA ERTEVDLKDK WRNLVR
101: LMWPLSASEG LYGDAVERIW TKRIGVLKER GSGLVSEELL KWEADLRKAV EDDEVYKRIR ESNVRYSAVC FLNQLLEEQW AVLGSCSLES FAQRMLLKRR
201: KGADKGSRED PNAVDGDNRD VDGVECLEND EQHAAEGERT MGAQEQEHEP SLDKGDKMVA QELKYYLLEI QRQLQEPNNA NITPPQPSRV NSTRKSGQQQ
301: DSASESRVRP HLPTPEPLNV SPLKKKRANP AARRIKKFWT PEEEAVLREG VKEYGKSWKE IKNANPEVFA ERTEVDLKDK WRNLVR
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.