Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32992 | Canola | nucleus | 90.27 | 83.41 |
| CDY32708 | Canola | nucleus | 14.21 | 76.0 |
| AT5G58340.1 | Thale cress | nucleus | 72.07 | 64.51 |
| CDY27805 | Canola | nucleus | 63.09 | 64.21 |
| CDY32710 | Canola | cytosol | 10.22 | 64.06 |
| CDY41924 | Canola | nucleus | 60.1 | 62.44 |
| Solyc06g082510.2.1 | Tomato | nucleus | 26.93 | 23.13 |
| KRH41741 | Soybean | nucleus | 7.48 | 23.08 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 27.43 | 22.96 |
| KRH63009 | Soybean | nucleus | 24.44 | 22.37 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.19 | 22.14 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 22.69 | 21.82 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 22.69 | 21.82 |
| PGSC0003DMT400078128 | Potato | nucleus | 25.19 | 21.77 |
| KRH30478 | Soybean | nucleus | 25.44 | 21.75 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 22.44 | 21.63 |
| KRH54884 | Soybean | nucleus | 26.43 | 21.5 |
| OQU93426 | Sorghum | cytosol | 18.95 | 21.29 |
| KRG98140 | Soybean | nucleus | 24.44 | 20.94 |
| TraesCS2B01G094500.1 | Wheat | plastid | 19.7 | 20.9 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 18.95 | 20.88 |
| EER93019 | Sorghum | nucleus | 21.95 | 20.51 |
| TraesCS2A01G079700.1 | Wheat | plastid | 19.2 | 20.42 |
| Zm00001d007141_P003 | Maize | nucleus | 21.7 | 19.82 |
| Zm00001d036356_P005 | Maize | nucleus | 21.45 | 19.77 |
| Os07t0695900-01 | Rice | nucleus | 18.7 | 19.53 |
| Zm00001d045123_P001 | Maize | nucleus | 19.2 | 19.11 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 17.96 | 19.0 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 11.47 | 16.49 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 12.72 | 16.45 |
| Os06t0181300-01 | Rice | nucleus | 13.72 | 16.42 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 23.19 | 13.88 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.94 | 13.73 |
| OQU91491 | Sorghum | nucleus | 16.71 | 11.39 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 16.46 | 11.04 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078I185 | UniProt:A0A078I185 | EnsemblPlants:CDY43862 | ProteinID:CDY43862 |
| ProteinID:CDY43862.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00077409001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EE1F02 | SEG:seg |
Description
BnaC09g33810DBnaC09g33810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I185]
Coordinates
chrLK032571:-:26255..28227
Molecular Weight (calculated)
45428.6 Da
IEP (calculated)
6.402
GRAVY (calculated)
-0.720
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIIDKWVAE FLIRCQHNPR VSPTNLLSAL RFGDSGDCLK LKVSSVLLDL SDSLTRGSVD EGTLDLLEIL EKLLLQQCSV ITESHKSAYC WTAAECTLRF
101: MWPLDPLDGL FTDALERIWT KRIGFLKESG SGLVSDELLK WEADLKKAVE DPEMYQRIRE SNIRYTAISF LNQLLKEQWG LLGSSSLESV AQRRFRKRKA
201: ENNVEGDGVR SREGPNGVDE RTGRMETEEE GTMGSQEQKH ESSPDKGDKM AARELKDYLL EIQRQIDPST RQVQEPNDAF DHSVNVTPQP SRVNRTGTSG
301: QDHIETPDNA SEKGSSSQGT WSGRVRPRLS SPVPLNVSPL KKTNSPVRRP KKFWTPEEVE ALRAGVKEYG KSWKDIKNAN PAVFAERTEV DLKDKWRNLV
401: R
101: MWPLDPLDGL FTDALERIWT KRIGFLKESG SGLVSDELLK WEADLKKAVE DPEMYQRIRE SNIRYTAISF LNQLLKEQWG LLGSSSLESV AQRRFRKRKA
201: ENNVEGDGVR SREGPNGVDE RTGRMETEEE GTMGSQEQKH ESSPDKGDKM AARELKDYLL EIQRQIDPST RQVQEPNDAF DHSVNVTPQP SRVNRTGTSG
301: QDHIETPDNA SEKGSSSQGT WSGRVRPRLS SPVPLNVSPL KKTNSPVRRP KKFWTPEEVE ALRAGVKEYG KSWKDIKNAN PAVFAERTEV DLKDKWRNLV
401: R
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.