CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES13315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	EES13315	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013827_P001	Maize	extracellular, nucleus	51.7	50.84
Os07t0695900-01	Rice	nucleus	26.53	40.62
HORVU2Hr1G013090.1	Barley	nucleus	25.34	39.31
TraesCS2D01G077000.1	Wheat	nucleus	23.81	38.46
TraesCS2B01G094500.1	Wheat	plastid	24.32	37.83
TraesCS2A01G079700.1	Wheat	plastid	23.64	36.87
EER93019	Sorghum	nucleus	19.9	27.27
KRH41741	Soybean	nucleus	5.95	26.92
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.22	26.9
OQU93426	Sorghum	cytosol	14.63	24.09
CDY32710	Canola	cytosol	2.55	23.44
CDY32708	Canola	nucleus	2.89	22.67
Bra020373.1-P	Field mustard	nucleus	9.86	20.79
GSMUA_Achr4P27790_001	Banana	nucleus	9.69	20.43
GSMUA_Achr9P30360_001	Banana	nucleus	9.69	18.39
CDY41924	Canola	nucleus	11.9	18.13
KRH63009	Soybean	nucleus	13.27	17.81
AT1G15720.1	Thale cress	nucleus	11.56	17.44
CDY27805	Canola	nucleus	11.56	17.26
Bra039470.1-P	Field mustard	nucleus	11.56	17.26
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.05	16.72
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	19.05	16.72
CDY43862	Canola	nucleus	11.39	16.71
KRH54884	Soybean	nucleus	13.44	16.02
VIT_06s0004g08050.t01	Wine grape	nucleus	12.93	15.87
CDY32992	Canola	nucleus	11.39	15.44
KRH30478	Soybean	nucleus	12.07	15.14
KRG98140	Soybean	nucleus	11.73	14.74
AT5G58340.1	Thale cress	nucleus	11.22	14.73
Bra002659.1-P	Field mustard	nucleus	9.69	13.16
Solyc06g082510.2.1	Tomato	nucleus	9.86	12.42
PGSC0003DMT400078128	Potato	nucleus	9.18	11.64

Protein Annotations

EnsemblPlants:OQU91491	EnsemblPlantsGene:SORBI_3001G190000	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	PANTHER:PTHR21717
PANTHER:PTHR21717:SF32	PFAM:PF00249	PFscan:PS51294	ProteinID:OQU91491	ProteinID:OQU91491.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI000B8B9709	UniProt:A0A1Z5S6C8	MapMan:15.5.2.2	:

Description

hypothetical protein

Coordinates

chr1:+:16797260..16800718

Molecular Weight (calculated)

62534.3 Da

IEP (calculated)

6.371

GRAVY (calculated)

-0.290

Length

588 amino acids

Sequence
(BLAST)

001: MALVDAKAAG AFTSTSIVAA APAPTAEHLF LVVLDGVETP IHEGTTLHGS AGGTVTVTSP GQLSADGLHS VVLVRGGGTG AVRFTLCADA AAEGVGLASF
101: DRCGAARVEG AREVSVSRCR AAEVERAGRV TLDRCRDARL RGGGALRAAR CRRADVESFG GVRLARCRAA RADWCGTVEV ELCRAVDVTR CGAVTGERCR
201: VVNAAGCGSV DVARAVINLV EEEQPFPAST ASSSRIGGGI TTGIVPAVAM PPLTAADDFL ILEFIAGNRR IPYAVFDSLL ACLSSPSAIH RTSQRLRQAL
301: VLRALDAALL TEGASSLVLY KARKVLADPD AAACFPHQIS VTDNEENDEA RAAAAVADLK RLLDLEWANL PPSTLERAAD RIAGDGAHQT WAAADHIKLG
401: ESTEHEILSK AVQDGSASHQ PIVTEVADNV SNANDADGAQ RDDEAHSSNE NSEADRGQEG MAGHQNASVK GGEGQVSEKS VPASKRCSLM ERNPNASTYE
501: WDSSDDDQPV RKRKLHRFER TSTCAHKIRK KWSEIEEKTL LEGVKKYGKG NWKDIKLAYP DVFEERSTVD LKDKFRNLER HHHESASA

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.