Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra002954.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | Bra002954.1-P | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27805 | Canola | nucleus | 97.97 | 97.97 |
| Bra002659.1-P | Field mustard | nucleus | 64.72 | 58.89 |
| AT1G15720.1 | Thale cress | nucleus | 55.58 | 56.15 |
| Bra020373.1-P | Field mustard | nucleus | 33.5 | 47.31 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 29.44 | 24.22 |
| Solyc06g082510.2.1 | Tomato | nucleus | 27.92 | 23.55 |
| PGSC0003DMT400078128 | Potato | nucleus | 27.41 | 23.28 |
| KRH63009 | Soybean | nucleus | 25.63 | 23.06 |
| KRH54884 | Soybean | nucleus | 27.66 | 22.11 |
| KRH41741 | Soybean | nucleus | 7.11 | 21.54 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.84 | 21.43 |
| KRH30478 | Soybean | nucleus | 25.38 | 21.32 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 22.34 | 21.1 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 22.34 | 21.1 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 22.08 | 20.91 |
| KRG98140 | Soybean | nucleus | 24.62 | 20.73 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 19.04 | 20.6 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 19.8 | 20.58 |
| Os07t0695900-01 | Rice | nucleus | 20.05 | 20.57 |
| TraesCS2B01G094500.1 | Wheat | plastid | 19.29 | 20.11 |
| TraesCS2A01G079700.1 | Wheat | plastid | 18.78 | 19.63 |
| OQU93426 | Sorghum | cytosol | 17.77 | 19.61 |
| EER93019 | Sorghum | nucleus | 21.07 | 19.35 |
| Zm00001d007141_P003 | Maize | nucleus | 21.07 | 18.91 |
| Zm00001d036356_P005 | Maize | nucleus | 20.81 | 18.85 |
| Zm00001d045123_P001 | Maize | nucleus | 18.78 | 18.36 |
| Os06t0181300-01 | Rice | nucleus | 13.71 | 16.12 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 12.18 | 15.48 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 10.91 | 15.41 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.59 | 13.28 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 22.34 | 13.13 |
| OQU91491 | Sorghum | nucleus | 17.26 | 11.56 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 17.01 | 11.2 |
Protein Annotations
| EnsemblPlants:Bra039470.1 | EnsemblPlants:Bra039470.1-P | EnsemblPlantsGene:Bra039470 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF39 | PFAM:PF00249 | PFscan:PS51294 | SEG:seg | SMART:SM00717 |
| SUPFAM:SSF46689 | UniParc:UPI000254749F | UniProt:M4FEE9 | MapMan:15.5.2.2 | : | : |
Description
AT1G15720 (E=2e-120) TRFL5 | TRFL5 (TRF-LIKE 5); DNA binding / transcription factor
Coordinates
chrA05:+:23482478..23483903
Molecular Weight (calculated)
45121.6 Da
IEP (calculated)
7.437
GRAVY (calculated)
-0.765
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MKVMDKWVAE FFIRCQKNPR VSPTNLLSAL KFRESAGDCS YLKKSSVLRE ISDSLIRGNV AEGTLDLLET LEKLHRGSVL TESHKFAYCW TAVECTVRLM
101: WPLSASEGLY GDAVERIWTK RIGVLKERGS GLVSEELLKW EADLRKAVED DEVYKRIRES NVRYTAVCFL NQLLKEQWAV LGSCSLESVA QRMLLKSRKA
201: VDKGTRRLDE GEKENGEDNR DVHGVECPQH AAEEEEERTM GVQEQEHEPS LDEGDKMVAR ELKDFLLEIQ RQMDPSSTRQ LQEPNNANIT PPQPSRSVNR
301: TGTSGQQQDS ASENRVRPHL PTPEPLNVSP LKKKRANPAP RRIKKFWTPE EVAVLREGVK EYGKSWKEIK NANPEVLAER TEVDLKDKWR NLLR
101: WPLSASEGLY GDAVERIWTK RIGVLKERGS GLVSEELLKW EADLRKAVED DEVYKRIRES NVRYTAVCFL NQLLKEQWAV LGSCSLESVA QRMLLKSRKA
201: VDKGTRRLDE GEKENGEDNR DVHGVECPQH AAEEEEERTM GVQEQEHEPS LDEGDKMVAR ELKDFLLEIQ RQMDPSSTRQ LQEPNNANIT PPQPSRSVNR
301: TGTSGQQQDS ASENRVRPHL PTPEPLNVSP LKKKRANPAP RRIKKFWTPE EVAVLREGVK EYGKSWKEIK NANPEVLAER TEVDLKDKWR NLLR
001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.