Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS7A01G308600.1 | |
| TraesCS7B01G208700.1 | |
| TraesCS7D01G305300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | TraesCS7A01G308600.1 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | TraesCS7B01G208700.1 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | TraesCS7D01G305300.1 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G145200.1 | Wheat | nucleus | 94.0 | 94.0 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 93.53 | 93.75 |
| Os06t0181300-01 | Rice | nucleus | 55.16 | 68.66 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 65.23 | 64.76 |
| Zm00001d045123_P001 | Maize | nucleus | 59.71 | 61.79 |
| EER93019 | Sorghum | nucleus | 63.55 | 61.77 |
| OQU93426 | Sorghum | cytosol | 52.28 | 61.06 |
| Zm00001d036356_P005 | Maize | nucleus | 60.19 | 57.7 |
| Zm00001d007141_P003 | Maize | nucleus | 60.67 | 57.63 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 65.23 | 40.6 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 64.99 | 40.45 |
| KRH41741 | Soybean | nucleus | 10.79 | 34.62 |
| TraesCS2B01G094500.1 | Wheat | plastid | 26.38 | 29.1 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 29.98 | 26.1 |
| KRH30478 | Soybean | nucleus | 29.02 | 25.8 |
| KRG98140 | Soybean | nucleus | 28.78 | 25.64 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 18.47 | 24.84 |
| Bra020373.1-P | Field mustard | nucleus | 16.07 | 24.01 |
| CDY41924 | Canola | nucleus | 21.82 | 23.58 |
| KRH63009 | Soybean | nucleus | 24.22 | 23.06 |
| Solyc06g082510.2.1 | Tomato | nucleus | 25.42 | 22.7 |
| CDY43862 | Canola | nucleus | 21.82 | 22.69 |
| Bra039470.1-P | Field mustard | nucleus | 21.1 | 22.34 |
| CDY27805 | Canola | nucleus | 20.86 | 22.08 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 14.63 | 21.86 |
| PGSC0003DMT400078128 | Potato | nucleus | 23.98 | 21.55 |
| AT1G15720.1 | Thale cress | nucleus | 20.14 | 21.54 |
| CDY32708 | Canola | nucleus | 3.84 | 21.33 |
| CDY32992 | Canola | nucleus | 21.82 | 20.97 |
| CDY32710 | Canola | cytosol | 3.12 | 20.31 |
| KRH54884 | Soybean | nucleus | 23.74 | 20.08 |
| Bra002659.1-P | Field mustard | nucleus | 19.9 | 19.17 |
| AT5G58340.1 | Thale cress | nucleus | 20.14 | 18.75 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS7B01G047400 | EnsemblPlants:TraesCS7B01G047400.1 |
| TIGR:cd11660 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:+:46990894..46996546
Molecular Weight (calculated)
45090.2 Da
IEP (calculated)
6.364
GRAVY (calculated)
-0.363
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRLTPADAS LILDHVVGDA SIPTAAANVL LAGLPFPDRP TPRLLRSLLL RRLDTDPVSA AALDSLQLLA SLPDSGPASP VSAAHLAVAA FLACSAPDFD
101: AAARALFGRP GGRARRAVDE EEGGDPALAS SEALAAADQF EAAVGNAFSQ DVLKGLFGDR AKAERRVRDH LAAEWAAIGP SRLELAAEQI VGDGAVETWR
201: AADETVRAKY RILAGEEKAR EILSRIEDRI STPQVHKVIH DLKSRCADLH NVVDDPLPAA KAAADKVLAA RMDKAVHIND EELNNQAANC SVAGPSAVND
301: QGETLRKGTP SSLMDWNPTA QSLLWEDSLD PDGSRSQSHR PHLPSPRRIL VSPLQVAENK ARRRRARRWS SVEEETLRNG VEQFGSGNWK DILSHNPDVF
401: IGRTQVDLKD KWRNMMR
101: AAARALFGRP GGRARRAVDE EEGGDPALAS SEALAAADQF EAAVGNAFSQ DVLKGLFGDR AKAERRVRDH LAAEWAAIGP SRLELAAEQI VGDGAVETWR
201: AADETVRAKY RILAGEEKAR EILSRIEDRI STPQVHKVIH DLKSRCADLH NVVDDPLPAA KAAADKVLAA RMDKAVHIND EELNNQAANC SVAGPSAVND
301: QGETLRKGTP SSLMDWNPTA QSLLWEDSLD PDGSRSQSHR PHLPSPRRIL VSPLQVAENK ARRRRARRWS SVEEETLRNG VEQFGSGNWK DILSHNPDVF
401: IGRTQVDLKD KWRNMMR
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Arabidopsis Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.