Factsheet for Bra020373.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32710	Canola	cytosol	17.92	78.12
Bra002659.1-P	Field mustard	nucleus	53.05	34.18
Bra039470.1-P	Field mustard	nucleus	47.31	33.5
KRH41741	Soybean	nucleus	9.32	20.0
TraesCS7A01G145200.1	Wheat	nucleus	24.37	16.31
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	24.37	16.19
TraesCS7D01G146500.1	Wheat	nucleus	24.01	16.11
TraesCS7B01G047400.1	Wheat	nucleus	24.01	16.07
EER93019	Sorghum	nucleus	22.94	14.92
TraesCS2D01G077000.1	Wheat	nucleus	19.35	14.84
Zm00001d045123_P001	Maize	nucleus	21.15	14.64
KRH63009	Soybean	nucleus	22.58	14.38
Os07t0695900-01	Rice	nucleus	19.71	14.32
OQU93426	Sorghum	cytosol	18.28	14.29
TraesCS2B01G094500.1	Wheat	plastid	19.35	14.29
Zm00001d007141_P003	Maize	nucleus	22.22	14.12
TraesCS2A01G079700.1	Wheat	plastid	19.0	14.06
Zm00001d036356_P005	Maize	nucleus	21.86	14.02
GSMUA_Achr4P27790_001	Banana	nucleus	13.98	13.98
KRH54884	Soybean	nucleus	24.37	13.79
VIT_06s0004g08050.t01	Wine grape	nucleus	23.66	13.78
HORVU2Hr1G013090.1	Barley	nucleus	18.64	13.72
GSMUA_Achr9P30360_001	Banana	nucleus	14.7	13.23
KRH30478	Soybean	nucleus	22.22	13.22
Solyc06g082510.2.1	Tomato	nucleus	21.86	13.06
KRG98140	Soybean	nucleus	21.86	13.03
PGSC0003DMT400078128	Potato	nucleus	21.15	12.72
Os06t0181300-01	Rice	nucleus	12.54	10.45
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	24.37	10.15
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	24.01	10.0
OQU91491	Sorghum	nucleus	20.79	9.86
Zm00001d013827_P001	Maize	extracellular, nucleus	19.71	9.2

Protein Annotations

EnsemblPlants:Bra020373.1	EnsemblPlants:Bra020373.1-P	EnsemblPlantsGene:Bra020373	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:SANT/Myb	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39
PFAM:PF00249	SEG:seg	SUPFAM:SSF46689	UniParc:UPI0002543060	UniProt:M4DV30	MapMan:35.2

Description

AT5G58340 (E=2e-022) | DNA binding

Coordinates

chrA02:-:6453381..6454878

Molecular Weight (calculated)

31448.7 Da

IEP (calculated)

9.487

GRAVY (calculated)

-0.478

Length

279 amino acids

Sequence
(BLAST)

001: MEVIDKWVTE FFIRCQHNPR GSPTKLRSAL KFGDSPDCLK LKISSVLRGH LQSLIRGTVE ERTLDLLEIL EKLLMQQRSR KSNISYTAVS FLTQLVKEQW
101: ALLGSSTLES VAQGRVLKRK AENNVECDSP NDVDEITERL ESDTADDANE QRGSGMGTVG MLKEWDVWRM MGLISCGLIV KQQDNASEKG SGSQRTCSGR
201: VRPRLPSPVP LNISPLKSAD SFVRRRKKFW TPEEVEALRE GVKEYGKSWK DIKNANPAVF AKRTEVSMSL FVHSYSSVV

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.