Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15720.1 | KRG98855 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | KRH37954 | AT5G54810.1 | 21798944 |
| AT1G15720.1 | KRH46102 | AT5G54810.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH63009 | Soybean | nucleus | 65.38 | 19.41 |
| GSMUA_Achr9P30360_001 | Banana | nucleus | 43.08 | 18.06 |
| KRH54884 | Soybean | nucleus | 66.92 | 17.65 |
| CDY32708 | Canola | nucleus | 8.46 | 14.67 |
| GSMUA_Achr4P27790_001 | Banana | nucleus | 30.77 | 14.34 |
| VIT_06s0004g08050.t01 | Wine grape | nucleus | 46.15 | 12.53 |
| TraesCS7D01G146500.1 | Wheat | nucleus | 35.38 | 11.06 |
| PGSC0003DMT400078128 | Potato | nucleus | 39.23 | 10.99 |
| TraesCS7B01G047400.1 | Wheat | nucleus | 34.62 | 10.79 |
| TraesCS7A01G145200.1 | Wheat | nucleus | 33.85 | 10.55 |
| Solyc06g082510.2.1 | Tomato | nucleus | 36.92 | 10.28 |
| EER93019 | Sorghum | nucleus | 33.85 | 10.26 |
| Os07t0695900-01 | Rice | nucleus | 30.0 | 10.16 |
| Zm00001d036356_P005 | Maize | nucleus | 33.85 | 10.11 |
| Zm00001d007141_P003 | Maize | nucleus | 33.85 | 10.02 |
| EER98688 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 31.54 | 9.76 |
| Bra020373.1-P | Field mustard | nucleus | 20.0 | 9.32 |
| TraesCS2D01G077000.1 | Wheat | nucleus | 25.38 | 9.07 |
| TraesCS2A01G079700.1 | Wheat | plastid | 26.15 | 9.02 |
| Zm00001d045123_P001 | Maize | nucleus | 27.69 | 8.93 |
| TraesCS2B01G094500.1 | Wheat | plastid | 24.62 | 8.47 |
| KRG98140 | Soybean | nucleus | 30.0 | 8.33 |
| CDY41924 | Canola | nucleus | 24.62 | 8.29 |
| HORVU2Hr1G013090.1 | Barley | nucleus | 23.85 | 8.18 |
| AT1G15720.1 | Thale cress | nucleus | 23.08 | 7.69 |
| OQU93426 | Sorghum | cytosol | 20.77 | 7.56 |
| CDY43862 | Canola | nucleus | 23.08 | 7.48 |
| KRH30478 | Soybean | nucleus | 26.92 | 7.46 |
| CDY27805 | Canola | nucleus | 21.54 | 7.11 |
| Bra039470.1-P | Field mustard | nucleus | 21.54 | 7.11 |
| CDY32992 | Canola | nucleus | 23.08 | 6.91 |
| AT5G58340.1 | Thale cress | nucleus | 22.31 | 6.47 |
| EES15771 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 32.31 | 6.27 |
| OQU75965 | Sorghum | endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole | 31.54 | 6.12 |
| OQU91491 | Sorghum | nucleus | 26.92 | 5.95 |
| Bra002659.1-P | Field mustard | nucleus | 18.46 | 5.54 |
| Zm00001d013827_P001 | Maize | extracellular, nucleus | 25.38 | 5.52 |
| CDY32710 | Canola | cytosol | 2.31 | 4.69 |
| Os06t0181300-01 | Rice | nucleus | 3.85 | 1.49 |
Protein Annotations
| EMBL:ACUP02004778 | EnsemblPlants:KRH41741 | EnsemblPlantsGene:GLYMA_08G047600 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017877 | InterPro:Myb-like_dom | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF39 | PFscan:PS50090 | ProteinID:KRH41741 | ProteinID:KRH41741.1 | SUPFAM:SSF46689 | UniParc:UPI0006ED5867 |
| UniProt:A0A0R0IH50 | MapMan:15.5.2.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr8:+:3718412..3720913
Molecular Weight (calculated)
15188.0 Da
IEP (calculated)
10.333
GRAVY (calculated)
-1.218
Length
130 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKDLTSVPR NDYHRPSLME RNSTTPISEW NDSIDGLEGG TSDHAIRCHL PSPKGTKVSP LTKYKPTKIT RSRKTKRWSQ LEEETRKTAV DKFGRGKWKL
101: MLDSNKDIFK ERTEVDLNDK WRSMTRYGCK
101: MLDSNKDIFK ERTEVDLNDK WRSMTRYGCK
001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ
Arabidopsis Description
TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.