Factsheet for Os07t0695900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0135900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	Os08t0135900-01	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G077000.1	Wheat	nucleus	49.22	51.92
TraesCS2B01G094500.1	Wheat	plastid	51.04	51.85
HORVU2Hr1G013090.1	Barley	nucleus	51.04	51.72
TraesCS2A01G079700.1	Wheat	plastid	50.52	51.46
KRH41741	Soybean	nucleus	10.16	30.0
CDY32708	Canola	nucleus	5.47	28.0
OQU91491	Sorghum	nucleus	40.62	26.53
Zm00001d013827_P001	Maize	extracellular, nucleus	39.84	25.59
GSMUA_Achr4P27790_001	Banana	nucleus	17.19	23.66
Os06t0181300-01	Rice	nucleus	19.27	22.09
CDY32710	Canola	cytosol	3.65	21.88
GSMUA_Achr9P30360_001	Banana	nucleus	16.67	20.65
CDY27805	Canola	nucleus	20.57	20.05
Bra039470.1-P	Field mustard	nucleus	20.57	20.05
AT1G15720.1	Thale cress	nucleus	20.05	19.74
Bra020373.1-P	Field mustard	nucleus	14.32	19.71
CDY41924	Canola	nucleus	19.27	19.17
CDY43862	Canola	nucleus	19.53	18.7
CDY32992	Canola	nucleus	21.09	18.66
KRH63009	Soybean	nucleus	21.09	18.49
KRH54884	Soybean	nucleus	23.44	18.26
KRH30478	Soybean	nucleus	22.14	18.12
KRG98140	Soybean	nucleus	21.88	17.95
VIT_06s0004g08050.t01	Wine grape	nucleus	21.61	17.33
Bra002659.1-P	Field mustard	nucleus	19.01	16.86
AT5G58340.1	Thale cress	nucleus	19.53	16.74
Solyc06g082510.2.1	Tomato	nucleus	18.49	15.2
PGSC0003DMT400078128	Potato	nucleus	16.93	14.01

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:4344404	ProteinID:BAC84071.1	ProteinID:BAF22662.1	ProteinID:BAT03387.1
GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
InterPro:IPR017930	InterPro:Myb_dom	EnsemblPlantsGene:Os07g0695900	EnsemblPlants:Os07t0695900-01	PFAM:PF00249	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF32	UniProt:Q6Z3X4	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
UniParc:UPI00001BF566	RefSeq:XP_015646481.1	SEG:seg	:	:	:

Description

Homeodomain-related domain containing protein. (Os07t0695900-01)

Coordinates

chr7:+:29663362..29666163

Molecular Weight (calculated)

41779.0 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.571

Length

384 amino acids

Sequence
(BLAST)

001: MTPADAFLIL DFLAGNRLIP HSVFTTLLAS LPSVSPHTSP RLRAGLALRA LDSALSISES SEMDAPTLLR KARAVLADPD LAPFFPQHLA APASADDAPA
101: AAVAHLNRLL DVEWASLPPS SLEIAAERIV GSQALHSWAN ADHAQRSKLR LLVGESTALE ILDTLQRPDA STNHPGTLPQ VDNAPETNGA SHCAQQNDGA
201: KSGLVKQNAE ADRPQQDSTR HQQDSVQGAS NSQLKESSVT MESIRGTGPD ITGFMEEATP RVAGQFAPDN IKNHQVTGSK RSLMERNPTA STYEWDGSDS
301: EGKRPAAKRR LPIFERTAKP SPTAAHKTRK KWSEKQEKTL LEGVEKYGKG NWKDIKMAYP DVFEDRSTVD LKDKFRNLER HLCA

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.