Factsheet for Zm00001d013827_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

mitochondrion 1
nucleus 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus, secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d024702_P001
Zm00001d049610_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	Zm00001d024702_P001	AT5G54810.1	21798944
AT1G15720.1	Zm00001d049610_P001	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91491	Sorghum	nucleus	50.84	51.7
Os07t0695900-01	Rice	nucleus	25.59	39.84
TraesCS2D01G077000.1	Wheat	nucleus	24.08	39.56
TraesCS2B01G094500.1	Wheat	plastid	24.25	38.36
HORVU2Hr1G013090.1	Barley	nucleus	23.91	37.73
TraesCS2A01G079700.1	Wheat	plastid	23.75	37.67
CDY32708	Canola	nucleus	3.34	26.67
KRH41741	Soybean	nucleus	5.52	25.38
Zm00001d036356_P005	Maize	nucleus	16.05	22.07
Zm00001d007141_P003	Maize	nucleus	15.89	21.64
Zm00001d045123_P001	Maize	nucleus	13.88	20.6
Bra020373.1-P	Field mustard	nucleus	9.2	19.71
GSMUA_Achr4P27790_001	Banana	nucleus	8.86	19.0
CDY32710	Canola	cytosol	2.01	18.75
CDY41924	Canola	nucleus	11.54	17.88
KRH63009	Soybean	nucleus	12.71	17.35
CDY27805	Canola	nucleus	11.2	17.01
Bra039470.1-P	Field mustard	nucleus	11.2	17.01
AT1G15720.1	Thale cress	nucleus	11.04	16.92
CDY43862	Canola	nucleus	11.04	16.46
CDY32992	Canola	nucleus	11.54	15.9
KRH54884	Soybean	nucleus	13.04	15.82
KRH30478	Soybean	nucleus	12.37	15.78
GSMUA_Achr9P30360_001	Banana	nucleus	8.03	15.48
Solyc06g082510.2.1	Tomato	nucleus	12.04	15.42
VIT_06s0004g08050.t01	Wine grape	nucleus	12.04	15.03
KRG98140	Soybean	nucleus	11.54	14.74
AT5G58340.1	Thale cress	nucleus	11.04	14.73
Bra002659.1-P	Field mustard	nucleus	10.37	14.32
PGSC0003DMT400078128	Potato	nucleus	10.37	13.36

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100383782	MapMan:15.5.2.2	UniProt:A0A1D6GMG0	ProteinID:AQK64470.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:IPR017884	PFAM:PF00249	PFscan:PS51293	PANTHER:PTHR21717
PANTHER:PTHR21717:SF32	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI00084564D9
EnsemblPlantsGene:Zm00001d013827	EnsemblPlants:Zm00001d013827_P001	EnsemblPlants:Zm00001d013827_T001	SEG:seg	:	:

Description

MYB-related-transcription factor 99TRF-like 5

Coordinates

chr5:+:21505251..21508807

Molecular Weight (calculated)

64376.6 Da

IEP (calculated)

8.682

GRAVY (calculated)

-0.222

Length

598 amino acids

Sequence
(BLAST)

001: MALVDAKAAG ASTSTVAAAP TVEHLLFLVV LDGVETPIHE GTLYGSAGGT VTVTGPGQLS ADGLESVLVR GGGTGAGAVR FTLCADAAAE GVGAACFERC
101: GAARVEGARE VSVSSCRAVE VERAGRVTLD RCRDARLRGG GALRATRCRR ADVESFGGVR LARCKAARAD WCGTVEVELC RAVDVRRCGA VTGERCRVVN
201: AAGPAAHPQQ HCLVVSHIGV GITVGIVPIT MPPLPAADDL LILEFIASNR RIPHAVFNSF IASQSPPSAF SRTSQRLRKA LVLRALDAAL YTVGASCSSS
301: LLLHKARKVL ADPDAAACFP HQIPFTENEE NDEARAAVAD LKRLLDLEWA NLPPSTLELV AGDGSHQTGA AADHTMRTKL RLFGESAKRE ILAKPVQVGS
401: ASHQSIRTQV ADNASNANKA DGARRDEAHP SNSNVNYEAD SDRESMVGHQ NASVKGAEGQ LSEKSVFTSK KRVLVERIPK ASTYQALLPF QIIRHFNFSR
501: FITTFLNIWD SSDDDQPVRK RKLDPFERKP YPSPTCAYKI RKKWSKIEIE TLLEGVDKYG IGNWKDIKLA YPGVFEERST VDLKDKFRNL GKRHHESS

Best Arabidopsis Sequence Match ( AT1G15720.1 )
(BLAST)

001: MEVMDKWVAE FFLRRQLNPR VYAFPLLSAL KPVDSDDCVK LKLTAVLRDI SNSMIQGTVD EGMLDLLEIL EKLLLQEHSV IMGSLKSAYC WTAVECTLRF
101: MWPVNASDGF FGDALERIWR NRIGTLKEKE SDLVTRELLK WESDLNKAFE EPEIYQKIRE TNIRYNAISH LNQLLKEQWA LLGCSSLESE ARKRFLKRKD
201: SPYASRRGGN REKANDVEEV GGVENPDGVG KVNEHEQEHE PSLNKGEMLV ARELKDFLLE IQRLIDPITR QDQEPNNAME HSVDVTPQPD GANRTDAEDS
301: EGTSSSRRVR PHLPTPEPLN VSPLKKGRLE RPRPRRPMKF WTSEEVAALR EGVKEYGKSW KDIKNSYPVV FADRSEVDLK DKWRNLLGRQ

Arabidopsis Description

TRFL5At1g15720 [Source:UniProtKB/TrEMBL;Acc:Q9LMR2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.