CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G15720.1	KRG98855	AT5G54810.1	21798944
AT1G15720.1	KRH37954	AT5G54810.1	21798944
AT1G15720.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30478	Soybean	nucleus	81.62	81.45
VIT_06s0004g08050.t01	Wine grape	nucleus	37.18	36.33
KRH63009	Soybean	nucleus	32.48	34.7
CDY32710	Canola	cytosol	4.49	32.81
KRH54884	Soybean	nucleus	33.76	32.05
PGSC0003DMT400078128	Potato	nucleus	30.13	30.39
KRH41741	Soybean	nucleus	8.33	30.0
Solyc06g082510.2.1	Tomato	nucleus	29.91	29.98
EER98688	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.5	29.52
TraesCS7B01G047400.1	Wheat	nucleus	25.64	28.78
TraesCS7D01G146500.1	Wheat	nucleus	25.0	28.12
TraesCS7A01G145200.1	Wheat	nucleus	25.0	28.06
EER93019	Sorghum	nucleus	24.36	26.57
Zm00001d045123_P001	Maize	nucleus	22.44	26.05
Os06t0181300-01	Rice	nucleus	18.16	25.37
OQU93426	Sorghum	cytosol	19.23	25.21
CDY41924	Canola	nucleus	20.73	25.13
GSMUA_Achr4P27790_001	Banana	nucleus	14.74	24.73
Bra039470.1-P	Field mustard	nucleus	20.73	24.62
CDY27805	Canola	nucleus	20.73	24.62
Zm00001d007141_P003	Maize	nucleus	23.08	24.6
CDY43862	Canola	nucleus	20.94	24.44
Zm00001d036356_P005	Maize	nucleus	22.44	24.14
CDY32992	Canola	nucleus	22.22	23.96
AT1G15720.1	Thale cress	nucleus	19.44	23.33
Bra002659.1-P	Field mustard	nucleus	20.73	22.4
GSMUA_Achr9P30360_001	Banana	nucleus	14.74	22.26
Os07t0695900-01	Rice	nucleus	17.95	21.88
Bra020373.1-P	Field mustard	nucleus	13.03	21.86
TraesCS2B01G094500.1	Wheat	plastid	17.52	21.69
AT5G58340.1	Thale cress	nucleus	20.51	21.43
TraesCS2D01G077000.1	Wheat	nucleus	16.45	21.15
TraesCS2A01G079700.1	Wheat	plastid	16.88	20.95
HORVU2Hr1G013090.1	Barley	nucleus	16.24	20.05
OQU75965	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.28	18.36
EES15771	Sorghum	endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, plastid, vacuole	26.28	18.36
CDY32708	Canola	nucleus	2.56	16.0
OQU91491	Sorghum	nucleus	14.74	11.73
Zm00001d013827_P001	Maize	extracellular, nucleus	14.74	11.54

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100791258	MapMan:15.5.2.2	EMBL:ACUP02010845	EnsemblPlantsGene:GLYMA_18G052700	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K7MQ33	ProteinID:KRG98139.1	EnsemblPlants:KRG98140	ProteinID:KRG98140	ProteinID:KRG98140.1	InterPro:Myb_dom
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF39	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	UniParc:UPI000233E883	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:4562472..4568069

Molecular Weight (calculated)

52759.1 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.701

Length

468 amino acids

Sequence
(BLAST)

001: MNSDISRWVM EFLLRSSVPD SLIQKTLTAL PLSPAEPRLK KNLLLRTLQT LLRRATLSET ALDILEDLAP VSDAQRRAYC AVAVECTVKY LAACPDVIDG
101: EYAGAVRRIW RGRVAALQAR RSGLVSGELV RWRDEIENAL GEDSRAARER LAGLNSRRDA MNEVRVYLKE AWEMMGPSFL ETVAATEKKN DEGACDNGSG
201: NGNDDDHDDG ACMEDVAMHY ENQEPLEESV DANQEVGGSD LTPQRDKAIL KRNPQLKHKH SAFRASHKGR GIKISSPEEV ESTKPWRKHD PVPSAEVKKI
301: RESLKSSSSE LQALVNDPLP DALHISDVVR SKLATSDTKI EPPIENQHED VEVQDPDVCL SIVPFQPNDV NLGKKSSVHC SNIHQPSLME RNRSARTFEW
401: EDSIDNSQQA RQPRRRKRKW SSLEEETLRA GVKMFGEGNW ATIRSFYSNI FENRSGVDLK DKWRNMIR

Best Arabidopsis Sequence Match ( AT5G58340.1 )
(BLAST)

001: MEVIDQWVAE FFLLRQHNPR ASPINLISAL KLGDSSDCIK LKISSVLRDI SNSLIRGTID EGMLDLLEIL EKLLLQQHSL LMDSHKSAYC WTATECTLRF
101: MWPMFASDGL FTDALERIWT KRIGILKESG SDLVTCDLLK WESDLKKALG DPELYQRIRE TNIRYTAISF LTQLLKEQWA LLGSSSLESV AQRRFLKRKA
201: VNVEGDVVDN RGDQSDVDES TRRFGSDTID IANEARGERE DGNGIGRDNA NDGEGMECLE NDGIDNVNAA DEEHTVSAQD QEHEPSLDKG DEMAARELKE
301: YLVEIQGHID PSTRQGEEPN SAIDHSVDVT PPPTRVNRTG TGCQDHNEAS DNVNEKGSDS QETWSSRVRP RRPTPVTLSV SPLKKGGLAK PHVRRPKKFW
401: KPEEVEALRE GVKEYGKSWK DIKNGNPTVF AERTEVDLKD KWRNLVGG

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q5XUY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.