CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	KRG98855	AT5G54810.1	21798944
AT5G54810.1	KRH37954	AT5G54810.1	21798944
AT5G54810.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026381.1-P	Field mustard	cytosol	43.51	66.34
CDX89281	Canola	cytosol	43.51	66.34
PGSC0003DMT400037303	Potato	cytosol	85.06	31.95
KRG98855	Soybean	mitochondrion, plastid	92.86	30.36
KRH46102	Soybean	nucleus, plastid	94.16	30.27
GSMUA_Achr4P07140_001	Banana	mitochondrion	83.77	29.93
PGSC0003DMT400002722	Potato	plastid	87.66	29.61
Solyc07g064280.2.1	Tomato	plastid	86.36	29.17
VIT_19s0177g00310.t01	Wine grape	plastid	85.06	28.6
Solyc10g006400.2.1	Tomato	plastid	85.71	28.21
AT4G27070.1	Thale cress	plastid	83.12	26.95
AT5G54810.1	Thale cress	plastid	81.17	26.6
EES13315	Sorghum	plastid	77.27	25.0
Zm00001d049610_P001	Maize	plastid	75.97	24.68
Os08t0135900-01	Rice	plastid	75.32	24.63
TraesCS7A01G308600.1	Wheat	plastid	74.03	24.26
TraesCS7B01G208700.1	Wheat	plastid	74.03	24.26
TraesCS7D01G305300.1	Wheat	plastid	74.03	24.26
Zm00001d024702_P001	Maize	plastid	75.32	24.22
HORVU7Hr1G073460.3	Barley	plastid	74.03	22.57
KRH27603	Soybean	mitochondrion	58.44	19.48
KRG93806	Soybean	cytosol	27.92	17.99
KRH18295	Soybean	nucleus, plastid	27.92	8.57

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:106794199	Gene3D:3.40.50.1100	MapMan:50.4.2	UniProt:A0A0R0IA73
EMBL:ACUP02005575	EnsemblPlantsGene:GLYMA_09G101000	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlants:KRH37954
ProteinID:KRH37954	ProteinID:KRH37954.1	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	InterPro:Trp_synth_beta
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0006EDF552	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:18385981..18388303

Molecular Weight (calculated)

16681.0 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.079

Length

154 amino acids

Sequence
(BLAST)

001: MGLFNEFVDD KDVRLIGMEA VGFGLDSGKH ATTLTKGEVG VLHGAMSYLL QDDDGEIVEP HSISAGLDYL GVGSKHSFMK DLGRAEYHSI TYEEALEAFK
101: RVSRLEGIIP ALETSHALAY LEKVCPTLPN GAKVVVNFSG RGDKDVQTAI KLKL

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.