CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 2
plastid 9

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98855
KRH37954
KRH46102

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	KRG98855	AT5G54810.1	21798944
AT5G54810.1	KRH37954	AT5G54810.1	21798944
AT5G54810.1	KRH46102	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46102	Soybean	nucleus, plastid	94.48	92.9
KRH37954	Soybean	cytosol	30.36	92.86
PGSC0003DMT400037303	Potato	cytosol	78.13	89.76
GSMUA_Achr4P07140_001	Banana	mitochondrion	76.86	83.99
Solyc07g064280.2.1	Tomato	plastid	80.04	82.68
PGSC0003DMT400002722	Potato	plastid	79.41	82.02
VIT_19s0177g00310.t01	Wine grape	plastid	79.19	81.44
Solyc10g006400.2.1	Tomato	plastid	80.25	80.77
AT5G54810.1	Thale cress	plastid	79.19	79.36
AT4G27070.1	Thale cress	plastid	79.83	79.16
Zm00001d049610_P001	Maize	plastid	74.95	74.47
TraesCS7A01G308600.1	Wheat	plastid	74.31	74.47
TraesCS7D01G305300.1	Wheat	plastid	74.31	74.47
TraesCS7B01G208700.1	Wheat	plastid	74.1	74.26
EES13315	Sorghum	plastid	74.73	73.95
Zm00001d024702_P001	Maize	plastid	74.52	73.28
Os08t0135900-01	Rice	plastid	73.25	73.25
Bra026381.1-P	Field mustard	cytosol	15.5	72.28
CDX89281	Canola	cytosol	15.29	71.29
HORVU7Hr1G073460.3	Barley	plastid	74.73	69.7
KRH27603	Soybean	mitochondrion	51.17	52.16
KRG93806	Soybean	cytosol	15.29	30.13
KRH18295	Soybean	nucleus, plastid	24.84	23.31

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:100801288	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EMBL:ACUP02010924
EnsemblPlantsGene:GLYMA_18G102800	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	UniProt:I1N0T6
EnsemblPlants:KRG98855	ProteinID:KRG98855	ProteinID:KRG98855.1	HAMAP:MF_00133	PFAM:PF00291	PIRSF:PIRSF001413
InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	TIGRFAMs:TIGR00263
InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000233E2A6	:

Description

hypothetical protein

Coordinates

chr18:-:10940609..10945019

Molecular Weight (calculated)

51212.3 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.192

Length

471 amino acids

Sequence
(BLAST)

001: MAASIPFTGL NSSRVLPIPK EPYHPFSHFP SSMPKFASLR IPSSSVSCSL TRDSSSVVPL EEHDKMGNGS VLLQRPDSFG RFGKFGGKYV PETLMHALSQ
101: LEAAFYSLAA DEEFQTELAG ILKDYVGRES PLYFAERLTE HYKRPNGEGP HIYLKREDLN HTGAHKINNA VAQALLAKRL GKKRIIAETG AGQHGVATAT
201: VCARFGLECI IYMGAQDMER QALNVFRMRL LGAEVRPVHS GTATLKDATS EAIRDWVTNV ETTHYILGSV AGPHPYPMMV REFHAVIGKE TRKQALEKWG
301: GKPDVLIACV GGGSNAIGLF NEFVDDKDVR LIGVEAAGFG LDSGKHAATL TKGEVGVLHG AMSYLLQDDD GQIVEPHSIS AGLDYPGVGP EHSFLKDLGR
401: AEYHSITDEE ALEAFKRVSR LEGIIPALET SHALAYLEKV CPTLANGAKV VVNFSGRGDK DVQTAIKYLK L

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.