Factsheet for Os08t0135900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0135900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	Os08t0135900-01	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037303	Potato	cytosol	73.46	84.39
TraesCS7B01G208700.1	Wheat	plastid	83.44	83.62
TraesCS7A01G308600.1	Wheat	plastid	83.44	83.62
TraesCS7D01G305300.1	Wheat	plastid	83.23	83.4
EES13315	Sorghum	plastid	84.29	83.4
Zm00001d024702_P001	Maize	plastid	84.29	82.88
Zm00001d049610_P001	Maize	plastid	82.8	82.28
CDX82609	Canola	cytosol	52.23	82.27
CDY55463	Canola	cytosol	52.23	82.27
GSMUA_Achr4P07140_001	Banana	mitochondrion	72.82	79.58
HORVU7Hr1G073460.3	Barley	plastid	83.44	77.82
VIT_19s0177g00310.t01	Wine grape	plastid	75.58	77.73
Solyc07g064280.2.1	Tomato	plastid	74.95	77.41
PGSC0003DMT400002722	Potato	plastid	74.73	77.19
CDY19860	Canola	plastid	75.16	76.13
CDY17275	Canola	plastid	74.95	75.91
CDY46668	Canola	plastid	76.01	75.85
Bra019075.1-P	Field mustard	plastid	76.01	75.85
Bra002954.1-P	Field mustard	plastid	74.73	75.7
CDX92783	Canola	plastid	75.8	75.64
Solyc10g006400.2.1	Tomato	plastid	74.95	75.43
KRH37954	Soybean	cytosol	24.63	75.32
AT5G54810.1	Thale cress	plastid	74.73	74.89
AT4G27070.1	Thale cress	plastid	75.16	74.53
KRG98855	Soybean	mitochondrion, plastid	73.25	73.25
KRH46102	Soybean	nucleus, plastid	73.89	72.65
CDY53670	Canola	cytosol	16.77	66.95
CDY56040	Canola	plastid	35.24	54.43
Os06t0632200-02	Rice	plastid	23.35	22.59

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	EntrezGene:4344612	EMBL:AK072535
ProteinID:BAD03061.1	ProteinID:BAD16309.1	ProteinID:BAF22859.1	ProteinID:BAT03736.1	ProteinID:EAZ41440.1	GO:GO:0000162
GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	HAMAP:MF_00133	EnsemblPlantsGene:Os08g0135900	EnsemblPlants:Os08t0135900-01
PFAM:PF00291	PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3
UniProt:Q6YYB9	SUPFAM:SSF53686	TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0000225FD8	RefSeq:XP_015650592.1	SEG:seg	:	:

Description

tryptophan synthaseSimilar to Tryptophan synthase beta chain 1 (EC 4.2.1.20) (Orange pericarp 1) (Fragment). (Os08t0135900-01);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-02);Similar to Tryptophan synthase beta-subunit. (Os08t0135900-03)

Coordinates

chr8:+:2029732..2033050

Molecular Weight (calculated)

50002.6 Da

IEP (calculated)

6.762

GRAVY (calculated)

-0.142

Length

471 amino acids

Sequence
(BLAST)

001: MAAAVGNPNA AAAASISASR VGAGALRAGG LRVAAGRRGA GAVVAAAMRP AKAVASPAKE AAGEVNGAAS GGFARPDAFG RFGKFGGKYV PETLMHALTE
101: LEAAFHALAG DEDFQKELDG ILKDYVGRET PLYFAERLTE HYKRADGTGP MIYLKREDLN HTGAHKINNA VAQVLLAKRL GKERIIAETG AGQHGVATAT
201: VCARFGLQCI IYMGAQDMER QALNVFRMKL LGAEVRAVHS GTATLKDATS EAIRDWVTNV ENTHYILGSV AGPHPYPMMV REFHKVIGKE TRRQAMEKWG
301: GKPDVLVACV GGGSNAMGLF HEFVDDQDIR MIGVEAAGYG VDTDKHAATL TKGEVGVLHG SLSYVLQDDD GQVIEPHSIS AGLDYPGVGP EHSFLKDIGR
401: AEYDSVTDQE ALDAFKRVSR LEGIIPALET SHALAYLEKL CPTLPDGVRV VVNCSGRGDK DVHTASKYLD V

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.