CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019075.1-P	Field mustard	plastid	98.52	98.52
CDX92783	Canola	plastid	98.52	98.52
CDY55463	Canola	cytosol	58.05	91.64
CDX82609	Canola	cytosol	58.05	91.64
CDY19860	Canola	plastid	88.77	90.11
CDY17275	Canola	plastid	88.56	89.89
AT4G27070.1	Thale cress	plastid	89.62	89.05
Zm00001d049610_P001	Maize	plastid	77.12	76.79
EES13315	Sorghum	plastid	77.12	76.47
TraesCS7B01G208700.1	Wheat	plastid	76.06	76.38
CDY53670	Canola	cytosol	19.07	76.27
TraesCS7A01G308600.1	Wheat	plastid	75.85	76.17
TraesCS7D01G305300.1	Wheat	plastid	75.85	76.17
Os08t0135900-01	Rice	plastid	75.85	76.01
Zm00001d024702_P001	Maize	plastid	76.48	75.37
CDX89281	Canola	cytosol	15.89	74.26
HORVU7Hr1G073460.3	Barley	plastid	75.64	70.69
CDY72593	Canola	cytosol, plastid	37.71	66.67
CDY56040	Canola	plastid	39.83	61.64
CDY05419	Canola	cytosol	11.65	57.89
CDY49790	Canola	mitochondrion	56.99	57.73
CDY21004	Canola	mitochondrion	40.68	57.14
CDY30322	Canola	plastid	51.91	55.56
CDY57048	Canola	cytosol	13.14	49.21
CDY63316	Canola	cytosol	22.67	27.72
CDX99679	Canola	cytosol	5.51	23.64
CDY52465	Canola	plastid	23.52	22.2
CDX67409	Canola	plastid	22.25	22.01
CDX74518	Canola	plastid	23.31	22.0
CDX99680	Canola	plastid	23.31	22.0
CDY01654	Canola	plastid	23.31	21.96
CDY50576	Canola	plastid	22.03	21.8
CDY30314	Canola	plastid	22.03	21.8

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:4.1.5.3.5.2	GO:A0A078IBR2	UniProt:A0A078IBR2
EnsemblPlants:CDY46668	ProteinID:CDY46668	ProteinID:CDY46668.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058
GO:GO:0009073	GO:GO:0009987	GO:GO:0016829	EnsemblPlantsGene:GSBRNA2T00085967001	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035
UniParc:UPI0004EE3F0B	SEG:seg	:	:	:	:

Description

BnaA03g48400DTryptophan synthase [Source:UniProtKB/TrEMBL;Acc:A0A078IBR2]

Coordinates

chrLK032681:-:60968..63302

Molecular Weight (calculated)

51380.3 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.264

Length

472 amino acids

Sequence
(BLAST)

001: MATSGTASTF KPSVSASSRL THLRSPPSKV PNFTPLPPSR SRSLSVSCTI AKDPTFLMAE AEKNKAAGSD PTLWKRPDSF GRFGKFGGKY VPETLMHALS
101: ELETAFYSLA TDDDFQRELA GILKDYVGRE SPLYFAERLT EHYRRENGEG PLIYLKREDL NHTGAHKINN AVAQALLAKR LGKKRIIAET GAGQHGVATA
201: TVCARFGLQC IIYMGAQDME RQALNVFRMR LLGAEVRGVH SGTATLKDAT SEAIRDWVTN VETTHYILGS VAGPHPYPMM VRDFHAVIGK ETRRQAMEKW
301: GGKPDVLVAC VGGGSNAMGL FHEFVDDTEV RMIGVEAAGF GLDSGKHAAT LTKGDVGVLH GAMSYLLQDD DGQIIEPHSI SAGLDYPGVG PEHSFLKDMG
401: RAEYYSVTDE EALEAFKRVS RLEGIIPALE TSHALAHLEK LCPTLPDGAR VVLNFSGRGD KDVQTAIKYL EV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.