CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21004	Canola	mitochondrion	71.91	57.14
CDY30322	Canola	plastid	93.63	56.69
Bra016829.1-P	Field mustard	plastid	98.5	56.68
AT5G28237.1	Thale cress	mitochondrion	91.76	52.69
CDY49790	Canola	mitochondrion	91.76	52.58
Solyc10g018380.1.1	Tomato	cytosol	40.07	51.2
PGSC0003DMT400074916	Potato	cytosol	18.73	50.51
CDY55463	Canola	cytosol	50.19	44.82
CDX82609	Canola	cytosol	49.44	44.15
VIT_10s0116g00710.t01	Wine grape	plastid	78.28	43.82
PGSC0003DMT400029363	Potato	plastid	74.91	43.57
Solyc10g005320.2.1	Tomato	plastid	73.78	42.83
Solyc10g018390.1.1	Tomato	cytosol	71.91	42.2
KRH27603	Soybean	mitochondrion	70.41	40.69
CDY17275	Canola	plastid	67.04	38.49
CDY19860	Canola	plastid	66.67	38.28
CDX92783	Canola	plastid	66.67	37.71
CDY46668	Canola	plastid	66.67	37.71
CDY56040	Canola	plastid	36.33	31.8
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	8.61	23.0
CDY63316	Canola	cytosol	27.34	18.91
HORVU4Hr1G035330.1	Barley	plastid	9.36	18.38
CDX99680	Canola	plastid	29.21	15.6
CDY52465	Canola	plastid	29.21	15.6
CDX74518	Canola	plastid	28.84	15.4
CDY01654	Canola	plastid	28.84	15.37
CDY50576	Canola	plastid	26.97	15.09
CDY30314	Canola	plastid	26.97	15.09
CDX67409	Canola	plastid	26.97	15.09
CDX89281	Canola	cytosol	5.24	13.86
CDY53670	Canola	cytosol	2.25	5.08
CDY57048	Canola	cytosol	1.87	3.97
CDY05419	Canola	cytosol	0.37	1.05
CDX99679	Canola	cytosol	0.37	0.91

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	GO:A0A078JY37	UniProt:A0A078JY37
EnsemblPlants:CDY72593	ProteinID:CDY72593	ProteinID:CDY72593.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00033707001	PFAM:PF00291	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2
SUPFAM:SSF53686	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035	UniParc:UPI0004EE6360

Description

BnaAnng41580DBnaAnng41580D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JY37]

Coordinates

chrLK052065:-:281..1682

Molecular Weight (calculated)

28394.9 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.142

Length

267 amino acids

Sequence
(BLAST)

001: EELTTALRDY VGRETPLYFA GRLTEHYKNI SQTTGGGPEI YLKREDLSHC GSHKINNALG QAMIARRLGC KRVVAATGAG QHGVATAAAC AKLSMECTVF
101: MGTTDIEKQS SNVLSMKLLG AQVKSVEGTF KDASSEAIRN WVGNLETTYY LSGTVVGPHP SPLMVREFQS VIGKETRRQA KQLWGGKPDV LVACVGSGSN
201: ALGLFHEFLG DEDVRLVGVE AAGLGLDSGK HSATLAVGDV GVYHGSMSYL LQDDQGQILK PHSIGVG

Best Arabidopsis Sequence Match ( AT5G28237.2 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQGTYLIVR HEQNLIITGP FLNSNWTVTV TINRKID

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.