Factsheet for VIT_10s0116g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72593	Canola	cytosol, plastid	43.82	78.28
PGSC0003DMT400029363	Potato	plastid	64.78	67.32
Solyc10g005320.2.1	Tomato	plastid	63.73	66.09
Bra016829.1-P	Field mustard	plastid	63.52	65.3
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	13.63	65.0
CDY21004	Canola	mitochondrion	45.28	64.29
Solyc10g018390.1.1	Tomato	cytosol	61.22	64.18
CDY49790	Canola	mitochondrion	62.05	63.52
AT5G28237.1	Thale cress	mitochondrion	60.8	62.37
CDY05419	Canola	cytosol	12.37	62.11
Bra037230.1-P	Field mustard	plastid	57.23	61.9
CDY30322	Canola	plastid	56.81	61.45
KRH27603	Soybean	mitochondrion	58.91	60.82
Bra016830.1-P	Field mustard	plastid	56.18	59.29
VIT_19s0177g00310.t01	Wine grape	plastid	54.72	56.99
Solyc10g018380.1.1	Tomato	cytosol	24.95	56.94
PGSC0003DMT400074916	Potato	cytosol	11.11	53.54
CDY57048	Canola	cytosol	14.05	53.17
VIT_14s0083g00460.t01	Wine grape	plastid	21.8	21.01
HORVU4Hr1G035330.1	Barley	plastid	5.87	20.59

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	EntrezGene:100250414	wikigene:100250414	Gene3D:3.40.50.1100	MapMan:50.4.2
ProteinID:CCB48171	ProteinID:CCB48171.1	UniProt:F6H7L3	EMBL:FN595248	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004834	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073
GO:GO:0009987	GO:GO:0016829	EntrezGene:LOC100250414	wikigene:LOC100250414	HAMAP:MF_00133	PFAM:PF00291
PIRSF:PIRSF001413	InterPro:PLP-dep	ScanProsite:PS00168	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686
TIGRFAMs:TIGR00263	InterPro:Trp_synth_b_CS	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI000198432E
ArrayExpress:VIT_10s0116g00710	EnsemblPlantsGene:VIT_10s0116g00710	EnsemblPlants:VIT_10s0116g00710.t01	RefSeq:XP_002264829	RefSeq:XP_002264829.1	SEG:seg

Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F6H7L3]

Coordinates

chr10:+:314963..317391

Molecular Weight (calculated)

51299.5 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.157

Length

477 amino acids

Sequence
(BLAST)

001: MACNLQTSFL PALKFPAEAT LDKRRGNALV VCSVASAADS IMTASTPTGS AVVVRPRPLS RREVETSERK MTGTTGKFGR FGGKFVPETL MTCLSKLEAE
101: FNLVLHDPEF QEELATALRD YVGRETPLYF AQRLTDHYKN ESGCGPEIYL KREDLNHGGA HKINNAIAQA MIAKRMGRTS IVAATGAGQH GVATAAACAK
201: LSLKCTIVMG TLDMERQASN VLLMKLLGAE VKSVDGNFKN ATSEAIREWV GNLETNYFLI GTAVGPHPCP SMVREFQSII GKETRRQAME RWGRKPDVLV
301: ACVGSGSNAL GLFHEFIADE DVRMIGVEAA GFGLESGKHS ATLAKGEVGV YHGAMSYLLQ DEEGQIVGPH SIGVGMEYPG VSPELSFLKE TGRVESYSVT
401: DQEAVDAYQL LCRLEGIFPA LEASHALAFL DKLCPTLPDG GKVVVNCSGR GDKDAPTVFR LTQGSSPGDN KRHPVSP

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.