CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57048	Canola	cytosol	73.68	55.56
CDY53670	Canola	cytosol	50.53	40.68
CDX89281	Canola	cytosol	37.89	35.64
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	31.58	30.0
CDX99679	Canola	cytosol	26.32	22.73
CDY21004	Canola	mitochondrion	75.79	21.43
CDY30322	Canola	plastid	84.21	18.14
CDX82609	Canola	cytosol	52.63	16.72
CDY55463	Canola	cytosol	52.63	16.72
CDY49790	Canola	mitochondrion	74.74	15.24
CDY56040	Canola	plastid	42.11	13.11
VIT_10s0116g00710.t01	Wine grape	plastid	62.11	12.37
KRH27603	Soybean	mitochondrion	57.89	11.9
CDY46668	Canola	plastid	57.89	11.65
CDX92783	Canola	plastid	57.89	11.65
PGSC0003DMT400029363	Potato	plastid	54.74	11.33
CDY19860	Canola	plastid	54.74	11.18
CDY17275	Canola	plastid	54.74	11.18
Solyc10g005320.2.1	Tomato	plastid	53.68	11.09
Solyc10g018390.1.1	Tomato	cytosol	48.42	10.11
CDY63316	Canola	cytosol	29.47	7.25
CDX67409	Canola	plastid	30.53	6.08
CDY30314	Canola	plastid	29.47	5.87
CDY50576	Canola	plastid	29.47	5.87
CDX74518	Canola	plastid	29.47	5.6
CDY01654	Canola	plastid	29.47	5.59
CDY52465	Canola	plastid	27.37	5.2
CDX99680	Canola	plastid	27.37	5.2
HORVU4Hr1G035330.1	Barley	plastid	5.26	3.68
CDY72593	Canola	cytosol, plastid	1.05	0.37
PGSC0003DMT400074916	Potato	cytosol	0.0	0.0
Solyc10g018380.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY05419	EnsemblPlantsGene:GSBRNA2T00120323001	Gene3D:3.40.50.1100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Trp_synth_beta
InterPro:Trypto_synt_PLP_dependent	KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	ProteinID:CDY05419
ProteinID:CDY05419.1	SUPFAM:SSF53686	UniParc:UPI0004EDF588	MapMan:35.1	:	:

Description

BnaC02g41270D

Coordinates

chrLK031961:+:1057968..1059610

Molecular Weight (calculated)

10363.5 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.016

Length

95 amino acids

Sequence
(BLAST)

1: MEELISDFGP EISFLKETGR AEFYTATDQE AIQACRLLSR LEGIIPALEP SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGL PSSLC

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.