CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05419	Canola	cytosol	55.56	73.68
CDY53670	Canola	cytosol	40.48	43.22
CDX89281	Canola	cytosol	30.95	38.61
Solyc05g046350.1.1	Tomato	cytosol, extracellular, plastid	24.6	31.0
CDY21004	Canola	mitochondrion	72.22	27.08
CDX99679	Canola	cytosol	20.63	23.64
CDY55463	Canola	cytosol	46.03	19.4
CDX82609	Canola	cytosol	45.24	19.06
CDY30322	Canola	plastid	63.49	18.14
CDY49790	Canola	mitochondrion	61.11	16.52
CDY56040	Canola	plastid	37.3	15.41
VIT_10s0116g00710.t01	Wine grape	plastid	53.17	14.05
CDY46668	Canola	plastid	49.21	13.14
CDX92783	Canola	plastid	49.21	13.14
CDY19860	Canola	plastid	48.41	13.12
PGSC0003DMT400029363	Potato	plastid	47.62	13.07
CDY17275	Canola	plastid	47.62	12.9
Solyc10g005320.2.1	Tomato	plastid	46.83	12.83
Solyc10g018390.1.1	Tomato	cytosol	45.24	12.53
KRH27603	Soybean	mitochondrion	44.44	12.12
CDY63316	Canola	cytosol	26.98	8.81
CDX74518	Canola	plastid	28.57	7.2
CDY01654	Canola	plastid	28.57	7.19
CDY50576	Canola	plastid	26.98	7.13
CDY30314	Canola	plastid	26.98	7.13
CDX67409	Canola	plastid	26.98	7.13
CDY52465	Canola	plastid	26.98	6.8
CDX99680	Canola	plastid	26.98	6.8
PGSC0003DMT400074916	Potato	cytosol	2.38	3.03
HORVU4Hr1G035330.1	Barley	plastid	3.17	2.94
CDY72593	Canola	cytosol, plastid	3.97	1.87
Solyc10g018380.1.1	Tomato	cytosol	1.59	0.96

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	UniProt:A0A078J1Q4	EnsemblPlants:CDY57048
ProteinID:CDY57048	ProteinID:CDY57048.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00020454001
PANTHER:PTHR42882	PANTHER:PTHR42882:SF2	SUPFAM:SSF53686	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0004EEB65A

Description

BnaC08g15020DBnaC08g15020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1Q4]

Coordinates

chrLK033542:+:47865..48451

Molecular Weight (calculated)

13967.1 Da

IEP (calculated)

7.976

GRAVY (calculated)

0.038

Length

126 amino acids

Sequence
(BLAST)

001: MHLTFIMGCY VKYSEPHICL IGRRLEYPGV GPEISFLKET GRVEFYTATD KEAIQACMLL SRLEGIIPAL EASHALAFLD KLVPILHDGA KVIVNCSGRG
101: DKDIDTLIKR GNPSSLSRVT KMSHYS

Best Arabidopsis Sequence Match ( AT5G28237.1 )
(BLAST)

001: MSSSKIQVRG QPLLRVPARN HRMTHLVVCG VSTKRHHREI NALSSNSGPS LDSVPTRTDK RQFLRGDGNG KFGRFGGKFV PETLMSRLIE LEDEFNFVRC
101: DHEFQEELTT ALRDYVGRET PLYFAERLTE HYKNIVPTIE GGPEIYLKRE DLSHCGSHKI NNALAQAMIS RRLGCSRVVA ATGAGQHGVA TAAACAKLSL
201: ECTVFMGAAD IEKQSFNVLS MKLLGAQVIS VEGTFKDASS EAIRNWVENL YTTYYLSGTV VGPHPCPIIV REFQSVIGKE TRRQAKQLWG GKPDVLVACV
301: GSGSNALGLF HEFVGDEDVR LVGVEAAGLG LDSGKHSATL AFGDVGVYHG SMSYLLQDDQ GQILKPHSVG VGLEYPGVGP EISFMKETGR AEFYTATDEE
401: AIQACMRLSR LEGIIPALEA SHALAFLDKL VPTLRDGAKV VVNCSGRGDK DLDTLIQRGM PSSFC

Arabidopsis Description

Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:F4K727]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.