CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82609
CDY17275
CDY19860
CDY53670
CDY55463
CDY56040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	CDX82609	AT5G54810.1	21798944
AT5G54810.1	CDY17275	AT5G54810.1	21798944
AT5G54810.1	CDY19860	AT5G54810.1	21798944
AT5G54810.1	CDY53670	AT5G54810.1	21798944
AT5G54810.1	CDY55463	AT5G54810.1	21798944
AT5G54810.1	CDY56040	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89281	Canola	cytosol	44.07	51.49
CDY05419	Canola	cytosol	40.68	50.53
CDY57048	Canola	cytosol	43.22	40.48
CDY55463	Canola	cytosol	79.66	31.44
CDX82609	Canola	cytosol	76.27	30.1
CDY56040	Canola	plastid	56.78	21.97
CDX99679	Canola	cytosol	20.34	21.82
CDY17275	Canola	plastid	76.27	19.35
CDY19860	Canola	plastid	76.27	19.35
CDX92783	Canola	plastid	76.27	19.07
CDY46668	Canola	plastid	76.27	19.07
AT5G54810.1	Thale cress	plastid	74.58	18.72
Zm00001d049610_P001	Maize	plastid	67.8	16.88
TraesCS7A01G308600.1	Wheat	plastid	66.95	16.81
TraesCS7B01G208700.1	Wheat	plastid	66.95	16.81
TraesCS7D01G305300.1	Wheat	plastid	66.95	16.81
Os08t0135900-01	Rice	plastid	66.95	16.77
CDY21004	Canola	mitochondrion	47.46	16.67
EES13315	Sorghum	plastid	66.95	16.6
Zm00001d024702_P001	Maize	plastid	66.1	16.28
HORVU7Hr1G073460.3	Barley	plastid	66.1	15.45
CDY30322	Canola	plastid	50.0	13.38
CDY49790	Canola	mitochondrion	50.0	12.66
CDY63316	Canola	cytosol	22.88	6.99
CDX67409	Canola	plastid	23.73	5.87
CDY50576	Canola	plastid	22.88	5.66
CDY30314	Canola	plastid	22.88	5.66
CDY52465	Canola	plastid	23.73	5.6
CDX99680	Canola	plastid	22.88	5.4
CDX74518	Canola	plastid	22.88	5.4
CDY01654	Canola	plastid	22.88	5.39
CDY72593	Canola	cytosol, plastid	5.08	2.25

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	UniProt:A0A078IRI8	EnsemblPlants:CDY53670
ProteinID:CDY53670	ProteinID:CDY53670.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00011214001
PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	InterPro:Trp_synth_beta	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0004EE9855

Description

BnaC04g52200DBnaC04g52200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRI8]

Coordinates

chrLK033226:+:6690..7610

Molecular Weight (calculated)

13337.8 Da

IEP (calculated)

4.929

GRAVY (calculated)

-0.425

Length

118 amino acids

Sequence
(BLAST)

001: MGAQDVDRQA LNNMPNHKLD YPGVGPEHSF FKDMGWAEYY SVTDEEAFEV KMCSLTQRFV AFSRVSRLEG IISALETSHA LEHLEKLCPT LPDGARVVLN
101: FRGRGDKDDQ TVAKYLEV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.