CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX82609
CDY17275
CDY19860
CDY53670
CDY55463
CDY56040

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54810.1	CDX82609	AT5G54810.1	21798944
AT5G54810.1	CDY17275	AT5G54810.1	21798944
AT5G54810.1	CDY19860	AT5G54810.1	21798944
AT5G54810.1	CDY53670	AT5G54810.1	21798944
AT5G54810.1	CDY55463	AT5G54810.1	21798944
AT5G54810.1	CDY56040	AT5G54810.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55463	Canola	cytosol	62.95	64.21
CDX82609	Canola	cytosol	62.3	63.55
CDY53670	Canola	cytosol	21.97	56.78
CDX89281	Canola	cytosol	18.03	54.46
CDY05419	Canola	cytosol	13.11	42.11
CDY21004	Canola	mitochondrion	44.92	40.77
CDY17275	Canola	plastid	61.64	40.43
CDY19860	Canola	plastid	61.64	40.43
CDX92783	Canola	plastid	61.64	39.83
CDY46668	Canola	plastid	61.64	39.83
AT5G54810.1	Thale cress	plastid	60.98	39.57
CDY57048	Canola	cytosol	15.41	37.3
CDY72593	Canola	cytosol, plastid	31.8	36.33
Zm00001d049610_P001	Maize	plastid	55.08	35.44
TraesCS7A01G308600.1	Wheat	plastid	54.43	35.32
TraesCS7D01G305300.1	Wheat	plastid	54.43	35.32
Os08t0135900-01	Rice	plastid	54.43	35.24
TraesCS7B01G208700.1	Wheat	plastid	54.1	35.11
EES13315	Sorghum	plastid	54.75	35.08
Zm00001d024702_P001	Maize	plastid	54.1	34.45
HORVU7Hr1G073460.3	Barley	plastid	53.77	32.48
CDY30322	Canola	plastid	45.9	31.75
CDY49790	Canola	mitochondrion	46.89	30.69
CDY63316	Canola	cytosol	21.97	17.36
CDX99679	Canola	cytosol	5.9	16.36
CDX67409	Canola	plastid	21.31	13.63
CDY30314	Canola	plastid	20.66	13.21
CDX74518	Canola	plastid	21.31	13.0
CDY50576	Canola	plastid	20.33	13.0
CDY01654	Canola	plastid	21.31	12.97
CDY52465	Canola	plastid	20.33	12.4
CDX99680	Canola	plastid	20.33	12.4

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:50.4.2	UniProt:A0A078IZI3	EnsemblPlants:CDY56040
ProteinID:CDY56040	ProteinID:CDY56040.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00017705001
PFAM:PF00291	InterPro:PLP-dep	PANTHER:PTHR42882	PANTHER:PTHR42882:SF3	SUPFAM:SSF53686	InterPro:Trp_synth_beta
InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0004EDD146	SEG:seg	:	:	:

Description

BnaCnng29710DBnaCnng29710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZI3]

Coordinates

chrLK033450:-:11207..12836

Molecular Weight (calculated)

33327.7 Da

IEP (calculated)

6.640

GRAVY (calculated)

-0.157

Length

305 amino acids

Sequence
(BLAST)

001: MPLHLCLRHC VSNYSACVSS FMFWESRNTR NAVISWASTC SSSIISTQVS QIEIKVWIFS PSVWGRRGSS LRQELVNTVL LTATVHGEAS PQCLQNATSW
101: CRGERSSLWN SHIEGRDIRS DKRLGSVAGP HPYPMMVRDF HAVIGKETRR QALEKWGGKP DVLVACVGGG SNAMGLFHEF VDDAEVRMIG VEAAGFGLDS
201: GKHAAPLTKG DVGVLHGAMS YLLQDDDGQI IEPQLDYPGV GPEHTLEAFN RVSRLEGIIS ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDDQTVA
301: KYLEV

Best Arabidopsis Sequence Match ( AT4G27070.1 )
(BLAST)

001: MATASTAATF RPSSVSASSE LTHLRSPSKL PKFTPLPSAR SRSSSSFSVS CTIAKDPAVV MADSEKIKAA GSDPTMWQRP DSFGRFGKFG GKYVPETLMH
101: ALSELETAFY SLATDEDFQR ELAEILKDYV GRESPLYFAE RLTEHYRREN GEGPLIYLKR EDLNHTGAHK INNAVAQALL AKRLGKKRII AETGAGQHGV
201: ATATVCARFG LQCIIYMGAQ DMERQALNVF RMRLLGAEVR GVHSGTATLK DATSEAIRDW VTNVETTHYI LGSVAGPHPY PMMVRDFHAV IGKETRKQAM
301: EKWGGKPDVL VACVGGGSNA MGLFHEFVDD TEVRMIGVEA AGFGLDSGKH AATLTKGDVG VLHGAMSYLL QDDDGQIIEP HSISAGLDYP GVGPEHSFLK
401: DVGRAEYFSV TDEEALEAFK RVSRLEGIIP ALETSHALAH LEKLCPTLPD GARVVLNFSG RGDKDVQTAI KYLEV

Arabidopsis Description

TSB2Tryptophan synthase [Source:UniProtKB/TrEMBL;Acc:Q0WS13]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.