CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome
BaCelLo:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99679	Canola	cytosol	25.39	89.09
Zm00001d046676_P001	Maize	extracellular	77.2	79.89
Bra028413.1-P	Field mustard	plastid	95.08	73.4
KRG93806	Soybean	cytosol	45.34	73.22
CDY30314	Canola	plastid	89.64	72.54
CDY50576	Canola	plastid	88.86	71.91
CDX67409	Canola	plastid	88.34	71.49
CDX74518	Canola	plastid	91.97	71.0
CDY01654	Canola	plastid	91.71	70.66
CDY52465	Canola	plastid	87.82	67.8
CDX99680	Canola	plastid	87.31	67.4
Solyc12g096190.1.1	Tomato	plastid	83.94	65.85
PGSC0003DMT400075555	Potato	plastid	83.94	65.85
VIT_14s0083g00460.t01	Wine grape	plastid	82.38	64.24
KRH18295	Soybean	nucleus, plastid	79.79	61.35
KXG20416	Sorghum	plastid	78.5	61.34
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	77.2	61.19
TraesCS7A01G392800.1	Wheat	plastid	77.2	61.19
HORVU7Hr1G092800.3	Barley	plastid	76.94	60.61
Os06t0632200-02	Rice	plastid	76.42	60.57
GSMUA_Achr2P05390_001	Banana	plastid	78.24	60.28
TraesCS7D01G388400.3	Wheat	cytosol	76.94	60.24
TraesCS2A01G257700.1	Wheat	nucleus	13.73	51.46
CDY05419	Canola	cytosol	7.25	29.47
CDY55463	Canola	cytosol	21.76	28.09
CDX82609	Canola	cytosol	21.24	27.42
CDY72593	Canola	cytosol, plastid	18.91	27.34
CDY57048	Canola	cytosol	8.81	26.98
CDX89281	Canola	cytosol	6.74	25.74
CDY21004	Canola	mitochondrion	22.02	25.3
CDY30322	Canola	plastid	26.68	23.36
CDY53670	Canola	cytosol	6.99	22.88
CDY19860	Canola	plastid	27.46	22.8
CDY17275	Canola	plastid	27.46	22.8
CDY46668	Canola	plastid	27.72	22.67
CDX92783	Canola	plastid	27.72	22.67
CDY56040	Canola	plastid	17.36	21.97
CDY49790	Canola	mitochondrion	25.65	21.24

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	GO:A0A078J8N1	UniProt:A0A078J8N1
EnsemblPlants:CDY63316	ProteinID:CDY63316	ProteinID:CDY63316.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004834	GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0030170	EnsemblPlantsGene:GSBRNA2T00039173001	PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824
InterPro:PLP-dep	PANTHER:PTHR43565	SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta
InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniPathway:UPA00035	UniParc:UPI0004EE7176	SEG:seg	:

Description

BnaCnng41850DBnaCnng41850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8N1]

Coordinates

chrLK034280:-:2574..4159

Molecular Weight (calculated)

42253.7 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.162

Length

386 amino acids

Sequence
(BLAST)

001: MQRIVPLLYN PESCFEFRAK RLEKLLQTPA RIYFKYEGSS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF ASSLFGLDCE VWQVANSYHQ
101: KPYRRLMMQT WGAKVHPSPS DLTEAGRKIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTVIGEECI KQMEDFGETP DVIIGCTGGG
201: SNFAGLSFPF IREKLKGNIS PVIRAVEPST CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL ISHVYEQGFM EAISIPQIEC
301: FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLSSYDKY LKGELVDLSF SEDKIRESLS KVPHVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.