Factsheet for Os06t0632200-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0218200-00
Os05t0210600-01
Os05t0587300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	Os01t0218200-00	AT2G42580.1	19000166
AT5G38530.1	Os05t0210600-01	AT2G42580.1	19000166
AT5G38530.1	Os05t0587300-01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046676_P001	Maize	extracellular	68.79	89.81
KXG20416	Sorghum	plastid	85.63	84.41
HORVU7Hr1G092800.3	Barley	plastid	82.75	82.24
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	81.52	81.52
TraesCS7D01G388400.3	Wheat	cytosol	81.31	80.32
CDY63316	Canola	cytosol	60.57	76.42
CDX99679	Canola	cytosol	16.84	74.55
GSMUA_Achr2P05390_001	Banana	plastid	74.54	72.46
Bra028413.1-P	Field mustard	plastid	72.48	70.6
PGSC0003DMT400075555	Potato	plastid	71.05	70.33
VIT_14s0083g00460.t01	Wine grape	plastid	71.46	70.3
Solyc12g096190.1.1	Tomato	plastid	70.84	70.12
AT5G38530.1	Thale cress	plastid	72.48	69.76
Bra028191.1-P	Field mustard	plastid	71.46	69.6
CDY01654	Canola	plastid	71.46	69.46
CDX74518	Canola	plastid	71.25	69.4
CDY30314	Canola	plastid	67.56	68.97
CDX67409	Canola	plastid	67.56	68.97
CDY50576	Canola	plastid	67.56	68.97
KRH18295	Soybean	nucleus, plastid	70.43	68.33
KRG93806	Soybean	cytosol	33.47	68.2
CDY52465	Canola	plastid	70.02	68.2
CDX99680	Canola	plastid	69.82	68.0
Bra025430.1-P	Field mustard	plastid	68.58	67.61
TraesCS2A01G257700.1	Wheat	nucleus	11.7	55.34
Os08t0135900-01	Rice	plastid	22.59	23.35

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	EntrezGene:4341584	EMBL:AK058470
ProteinID:BAD37798.1	ProteinID:BAS98736.1	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834
GO:GO:0005488	GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0030170	HAMAP:MF_00133	EnsemblPlantsGene:Os06g0632200	EnsemblPlants:Os06t0632200-02	PFAM:PF00291	PIRSF:PIRSF001413
PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565	UniProt:Q67VM1	SUPFAM:SSF53686	TIGRFAMs:TIGR01415
InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent	UniParc:UPI0000426399	RefSeq:XP_015643991.1
SEG:seg	:	:	:	:	:

Description

tryptophan synthaseSimilar to tryptophan synthase-related. (Os06t0632200-01);Similar to tryptophan synthase-related. (Os06t0632200-02)

Coordinates

chr6:-:25590293..25594365

Molecular Weight (calculated)

52905.7 Da

IEP (calculated)

7.591

GRAVY (calculated)

-0.163

Length

487 amino acids

Sequence
(BLAST)

001: MATTASVRPP LLRQAAGSEK ASLLCKPKQR ASVRRRSFTA RASSNPVSIP KQWYNLVADL PVKPPPPLHP QTHQPLNPSD LSPLFPDELI RQEVTEERFI
101: DIPEEVAEVY KLWRPTPLIR ARRLEKLLGT PAKIYYKYEG TSPAGSHKPN TAVPQAWYNA AAGVRSVVTE TGAGQWGSAL SFASSLFGLT CEVWQVRASY
201: DQKPYRRLMM ETWGATVHPS PSAATESGRR ILERDPASPG SLGIAISEAV EVAARDADTK YCLGSVLNHV LLHQTVIGEE CLEQLAAAGD VPDVVIGCTG
301: GGSNFGGLVF PFMREKLAGR MSPAFKAVEP AACPTLTKGV YAYDFGDTAG LTPLMKMHTL GHGFVPDPIH AGGLRYHGMA PLISHVYELG FMEAIAIQQT
401: ECFDAALKFA RTEGIIPAPE PTHAIAAAIR EAMECKRTGE KKVILMAMCG HGHFDLASYE KYLRGDMVDL SHSDEKLQEA LAAVPKI

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.