Factsheet for Bra025430.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G38530.1	Bra000267.1-P	AT2G42580.1	19000166
AT5G38530.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99679	Canola	cytosol	21.66	97.27
CDY52465	Canola	plastid	97.98	96.8
CDX99680	Canola	plastid	96.56	95.4
Bra028191.1-P	Field mustard	plastid	88.46	87.4
Bra028413.1-P	Field mustard	plastid	87.04	86.0
AT5G38530.1	Thale cress	plastid	82.39	80.43
Zm00001d046676_P001	Maize	extracellular	56.88	75.34
Solyc12g096190.1.1	Tomato	plastid	72.67	72.97
PGSC0003DMT400075555	Potato	plastid	72.06	72.36
VIT_14s0083g00460.t01	Wine grape	plastid	71.86	71.72
KRH18295	Soybean	nucleus, plastid	70.24	69.12
TraesCS7A01G392800.1	Wheat	plastid	68.02	68.99
Os06t0632200-02	Rice	plastid	67.61	68.58
HORVU7Hr1G092800.3	Barley	plastid	67.81	68.37
KRG93806	Soybean	cytosol	33.0	68.2
KXG20416	Sorghum	plastid	67.81	67.81
TraesCS7B01G294800.1	Wheat	mitochondrion, plastid	66.8	67.76
TraesCS7D01G388400.3	Wheat	cytosol	67.61	67.75
GSMUA_Achr2P05390_001	Banana	plastid	67.21	66.27
TraesCS2A01G257700.1	Wheat	nucleus	9.92	47.57
Bra026381.1-P	Field mustard	cytosol	5.06	24.75
Bra037230.1-P	Field mustard	plastid	20.65	23.13
Bra002954.1-P	Field mustard	plastid	21.46	22.8
Bra019075.1-P	Field mustard	plastid	21.26	22.25
Bra016829.1-P	Field mustard	plastid	20.45	21.77
Bra016830.1-P	Field mustard	plastid	19.64	21.46

Protein Annotations

KEGG:00260+4.2.1.20	KEGG:00400+4.2.1.20	Gene3D:3.40.50.1100	MapMan:35.1	EnsemblPlantsGene:Bra025430	EnsemblPlants:Bra025430.1
EnsemblPlants:Bra025430.1-P	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004834	GO:GO:0005488
GO:GO:0006568	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0030170
UniProt:M4E9H4	PFAM:PF00291	PIRSF:PIRSF001413	PIRSF:PIRSF500824	InterPro:PLP-dep	PANTHER:PTHR43565
SUPFAM:SSF53686	TIGRFAMs:TIGR01415	InterPro:Trp_synth_b-like	InterPro:Trp_synth_beta	InterPro:Trp_synth_beta/beta-like	InterPro:Trypto_synt_PLP_dependent
UniParc:UPI0002543888	SEG:seg	:	:	:	:

Description

AT5G38530 (E=2e-244) | tryptophan synthase-related

Coordinates

chrA04:+:8800595..8803061

Molecular Weight (calculated)

54505.4 Da

IEP (calculated)

8.042

GRAVY (calculated)

-0.224

Length

494 amino acids

Sequence
(BLAST)

001: MASQLLLPTN TFTNSSLVKV FVTGDDLTLK RKPNHATRVS YGFSLRANAA LISSHRSSVE VPRQWYNLVA DLSVKPPPQL HPKTFEPIKP DDLTHLFPNE
101: IIKQEETLER FIDIPEEVLE IYKLWRPTPL IRAKRLEKLL QTPARIYFKY EGGSPAGSHK PNSAVPQAYY NAKEGVKNVV TETGAGQWGS SLAFASSLFG
201: LDCEVFQVAH TYQQKPYRRL MMQTWGAKVH RSPSELTEAG RRILQADPSS TGSLGIAISE AVEVASRNED TKYCLGSVFN HVLLHQTVIG EECIKPGPSN
301: STRCTGGGSN FAGLSFPYIR EKLKGKINPI IRAVEPSACP SLTKGVYAYD FGDTAGLTPL MKMHTLGHDF IPSPIHSGGL RYHGMAPLVS HIYDQGFLEA
401: ISIPQTECFQ GAIQFARTEG IIPAPEPTHA IAATIREALR CKETGEAKVI LMAMCGHGHF DLASYEKYLR GELVDLSFSE EKIQESLSKV PLVV

Best Arabidopsis Sequence Match ( AT5G38530.1 )
(BLAST)

001: MASQLLLPPN QFTKSVSPQV FITGDCQGFS DLTLKRKSNQ ATRVSNGSSL RVKAALRSTH NKSVVEIPKQ WYNLVADLSV KPPPPLHPKT FEPIKPEDLA
101: HLFPNELIKQ EATQERFIDI PEEVLEIYKL WRPTPLIRAK RLEKLLQTPA RIYFKYEGGS PAGSHKPNTA VPQAYYNAKE GVKNVVTETG AGQWGSSLAF
201: ASSLFGLDCE VWQVANSYHT KPYRRLMMQT WGAKVHPSPS DLTEAGRRIL ESDPSSPGSL GIAISEAVEV AARNEDTKYC LGSVLNHVLL HQTIIGEECI
301: QQMENFGETP DLIIGCTGGG SNFAGLSFPF IREKLKGKIN PVIRAVEPSA CPSLTKGVYA YDFGDTAGLT PLMKMHTLGH DFIPDPIHAG GLRYHGMAPL
401: ISHVYEQGFM EAISIPQIEC FQGAIQFART EGIIPAPEPT HAIAATIREA LRCKETGEAK VILMAMCGHG HFDLTSYDKY LKGELVDLSF SEEKIRESLS
501: KVPHVV

Arabidopsis Description

TSBtype2Tryptophan synthase beta chain [Source:UniProtKB/TrEMBL;Acc:Q9FFW8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.